PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g052620.1 | ||||||||
Common Name | MTR_4g052620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 29816.1 Da PI: 5.7565 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.3 | 3.2e-45 | 6 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppGfrF Pt+eelv++yL++k++g ++ +++vi+ +di+ vePw+Lp+ +++++++w+fFs+ ++++a+g r+nr+t+ gyWkatg+ Medtr4g052620.1 6 PPGFRFFPTEEELVSFYLNNKLQGVTNAIDRVIPVIDINGVEPWNLPTlageLCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGY 99 9****************************999***************546654455777*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Medtr4g052620.1 100 VYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRA 136 ***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.188 | 5 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-48 | 5 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-24 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEDIFPPGFR FFPTEEELVS FYLNNKLQGV TNAIDRVIPV IDINGVEPWN LPTLAGELCR 60 EDKEQWFFFS PGQEREARGG RPNRTTACGY WKATGSPGYV YSSDNKVIGV KKTMVFYKGK 120 APSGRKTKWK MNEYRAIQVS NQSNTATPQL RREFSLCRIY VISGSFRAFD RRPLERERVD 180 QLPVNEIDQN PFGATSTHQN ATSSFEISQL GGLQSTHMPP EVVGGSNSTN WHVNSNNENN 240 GDEVQFQESL WEWDSEHFNW S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-35 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-35 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-35 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-35 | 5 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-35 | 5 | 160 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 5e-35 | 5 | 160 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22658 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g052620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051766 | 0.0 | BT051766.1 Medicago truncatula clone MTYF5_F6_F7_F81G-H-6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013455804.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-81 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A072UVE9 | 0.0 | A0A072UVE9_MEDTR; NAC transcription factor-like protein | ||||
STRING | XP_004506197.1 | 1e-143 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 8e-84 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g052620.1 |
Entrez Gene | 25492266 |
Publications ? help Back to Top | |||
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