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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g115620.1 | ||||||||
Common Name | MTR_3g115620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WOX | ||||||||
Protein Properties | Length: 216aa MW: 24447.5 Da PI: 5.5777 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.4e-20 | 80 | 140 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+ + ql++Le+ F + n +p+++++++++ +l +++e++V++WFqNrRa+ k+ Medtr3g115620.1 80 RQRWTPMPIQLQILERIFDEgNGTPTKQKIKDITIELgqhgQISETNVYNWFQNRRARSKR 140 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 97.8 | 8.3e-32 | 79 | 142 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP p Q++iLe+++++G tP+k++i++it eL ++G+i+++NV++WFQNr+aR+++kq Medtr3g115620.1 79 SRQRWTPMPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQ 142 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.09 | 76 | 141 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-16 | 76 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-12 | 78 | 145 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 79 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.01E-13 | 80 | 142 | No hit | No description |
Pfam | PF00046 | 1.3E-17 | 80 | 140 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEAEHENSGG GGGLYVKVIM TDEQMELLRQ QISVYTTISD QLVEMHKSIT TQHDLAGLRL 60 GNLYCDPLMM ACSGHKITSR QRWTPMPIQL QILERIFDEG NGTPTKQKIK DITIELGQHG 120 QISETNVYNW FQNRRARSKR KQSSVPAGNH AEPEADTEVE SPKENKTCEE SDQVQFFESL 180 SPHRVKDMYL QSPDIGFEHL LGKIEVAGCY NSYFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARSKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.10477 | 0.0 | pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g115620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462298.1 | 1e-163 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 5e-71 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A072V4R9 | 1e-161 | A0A072V4R9_MEDTR; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004500856.1 | 1e-125 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-68 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g115620.1 |
Entrez Gene | 25490322 |
Publications ? help Back to Top | |||
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