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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g098560.1 | ||||||||
Common Name | MTR_3g098560, Uni | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LFY | ||||||||
Protein Properties | Length: 393aa MW: 44460.2 Da PI: 7.0008 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 641.9 | 9.6e-196 | 1 | 378 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaa.aapp..arlleeaavse.apleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlm 90 mdp+af+aslfkwdpr++ +app +ll a++++ ap+ a r+l +leelf+ayG+ry+t+akiaelGftvstLvdmkd+eldd+m Medtr3g098560.1 1 MDPDAFTASLFKWDPRTVLpTAPPlrPQLLDYAVTPStAPSPYYPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDDELDDMM 94 9***************9984334454333333332221334455555566688***************************************** PP FLO_LFY 91 kslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe.ekeaagsggeglgeaelvaaeekksee 183 +sls+ifr+dllvGeryGikaa+raerrrl+eee krr lls d+++aldalsqeglseepv + ekea+gsgg++ ++e++++ee Medtr3g098560.1 95 NSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEE--IKRRGLLSGDTTNALDALSQEGLSEEPVVQrEKEAVGSGGGS--TWEVAVVEE----- 179 ********************************88..88889**********************999677788888877..999998873..... PP FLO_LFY 184 ekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekc 277 ++k++ + +++r k+ k + d+ e+ee de+ee++ ++g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekc Medtr3g098560.1 180 RRKRQ-QIRRRRMKM---KGNGDHGENEEGDEEEEDNISGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKC 269 33333.223333333...345566666777777778888899**************************************************** PP FLO_LFY 278 PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvP 371 PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrr fkergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvP Medtr3g098560.1 270 PTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVP 363 ********************************************************************************************** PP FLO_LFY 372 tkLrqLChlerskas 386 tkLrqLCh+er++a+ Medtr3g098560.1 364 TKLRQLCHAERNSAA 378 ***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 2.2E-204 | 1 | 378 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MDPDAFTASL FKWDPRTVLP TAPPLRPQLL DYAVTPSTAP SPYYPARLPR ELGGLEELFQ 60 AYGIRYYTAA KIAELGFTVS TLVDMKDDEL DDMMNSLSQI FRWDLLVGER YGIKAAIRAE 120 RRRLDEEEIK RRGLLSGDTT NALDALSQEG LSEEPVVQRE KEAVGSGGGS TWEVAVVEER 180 RKRQQIRRRR MKMKGNGDHG ENEEGDEEEE DNISGGGERQ REHPFIVTEP GEVARGKKNG 240 LDYLFHLYEQ CREFLIQVQA IAKERGEKCP TKVTNQVFRY AKKAGASYIN KPKMRHYVHC 300 YALHCLDEEV SNELRRGFKE RGENVGAWRQ ACYKPLVAIA ARQGWDIDAI FNAHPRLSIW 360 YVPTKLRQLC HAERNSAAAS SSVSVGTAHL PF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-110 | 216 | 386 | 2 | 172 | PROTEIN LEAFY |
2vy2_A | 1e-110 | 216 | 386 | 2 | 172 | PROTEIN LEAFY |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 189 | RRKRQQIRRRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf, leaflet, inflorescence and lateral shoot primordia on the main shoot axis, and in floral organ and carpel primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May regulate indeterminacy during leaf and flower development. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g098560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY928184 | 0.0 | AY928184.1 Medicago truncatula Unifoliata protein (Uni) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602745.1 | 0.0 | protein UNIFOLIATA | ||||
Swissprot | O48559 | 0.0 | UNI_PEA; Protein UNIFOLIATA | ||||
TrEMBL | Q5BN33 | 0.0 | Q5BN33_MEDTR; Floral meristem identity control protein LEAFY (LFY) protein | ||||
STRING | AES72996 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-108 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g098560.1 |
Entrez Gene | 11425571 |
Publications ? help Back to Top | |||
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