PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g053330.1
Common NameMTR_3g053330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 469aa    MW: 51785 Da    PI: 6.3481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g053330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29251309259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+   Cpv+k+v+r+aed +v+++tYeg+Hnh 
  Medtr3g053330.1 251 SDGCQWRKYGQKMAKGNPCPRAYYRCTMGtACPVRKQVQRCAEDRSVLVTTYEGQHNHA 309
                      7***************************98****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-33235311IPR003657WRKY domain
SuperFamilySSF1182903.14E-27243311IPR003657WRKY domain
PROSITE profilePS5081128.644245311IPR003657WRKY domain
SMARTSM007743.2E-35250310IPR003657WRKY domain
PfamPF031061.1E-25252308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEEEVICNDA IGNSRVVEVP HSSSSRVMSF NGKRLIMDEV DFFAEKKMSP VNDLTLHQME  60
HHHVDTSLDL LTKISPSNKL DDREYSNARN ENEYAVVVAK LHETNAENQR LRELIDRLRI  120
DHNALEEHIM QLKQKQNKHE TNDEATEEKN GMNMILRPFL NMGEPSQERK NMVDLMECDK  180
KSTQKLCNNG VIQEKTEREE DHHENSPSNK ALSNQVPRLN SFNGVDDQAS ESMIKKARVS  240
VRARSEANMI SDGCQWRKYG QKMAKGNPCP RAYYRCTMGT ACPVRKQVQR CAEDRSVLVT  300
TYEGQHNHAL PPTAKAMAST TTSAASMLLS GPMTSVDGLI NPTILESGSL PCSHTMATLS  360
ASAPFPTITL DLTEEAINNS SQKQLQQGQF NLLHPFLAQK FMSGSNIFGM ENASFVDTVS  420
AATAAMTSDP KFTSALVAAI TSIVGSNSNP NNNGTTNGTS GDQNCNKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-22241311877Probable WRKY transcription factor 4
2ayd_A1e-22237312175WRKY transcription factor 1
2lex_A1e-22241311877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g053330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357446e-36AC235744.1 Glycine max strain Williams 82 clone GM_WBb0115C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459851.10.0probable WRKY transcription factor 31
TrEMBLA0A072UWD70.0A0A072UWD7_MEDTR; Putative transcription factor WRKY family
STRINGXP_004513896.11e-171(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.19e-81WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]