PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g064470.1 | ||||||||
Common Name | MTR_2g064470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 307aa MW: 34667.3 Da PI: 8.0409 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 9.4e-52 | 11 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+deelv++yL kkv++++ l + +vd++k+ePwd+p+++ + kewyf+++rd+kyatg r+nrat+sgyWkatgkd+++l+ Medtr2g064470.1 11 LPPGFRFHPRDEELVCDYLMKKVTHSDSFL---MIDVDLNKCEPWDIPEAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRAILR 101 79**********************999444...789************7666789**************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 kg+lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Medtr2g064470.1 102 -KGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRI 134 .999****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-60 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.164 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence Send to blast |
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTHSDSFL MIDVDLNKCE PWDIPEAACV 60 GGKEWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRAIL RKGTLVGMRK TLVFYQGRAP 120 KGRKTEWVMH EFRIEGPHGP PKISSSKEDW VLCRVFYKNR EVATKPPSMG SCYDDTGSSS 180 LPALMDSYIS FDQAQFHTDE YEQVPCFSMF SQNQTNPIYN NITTNMEPKL PLANNNNAST 240 FGGAPYSLDP LSCDRKVLKA VLSQLSKMER NPINDQNLKG SSPSLGEGSS ESYLSEVGMP 300 HMWNNF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-49 | 6 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-49 | 6 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-49 | 6 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-49 | 6 | 165 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-49 | 6 | 165 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-49 | 6 | 165 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-49 | 6 | 165 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.3392 | 0.0 | flower| leaf| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
|
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g064470.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ343415 | 0.0 | HQ343415.1 Medicago truncatula NAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595973.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-129 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | F6KIF1 | 0.0 | F6KIF1_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES66224 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-125 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g064470.1 |
Entrez Gene | 11423905 |