PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g060760.1 | ||||||||
Common Name | MTR_2g060760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 720aa MW: 79084.4 Da PI: 10.1327 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.9 | 3.1e-10 | 21 | 70 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 W t+E++ll+ av ++G ++W+tIa +++ + t+ +c ++++ Medtr2g060760.1 21 WGTWEELLLASAVDRHGFKDWDTIAMEVQsrtnrtsLLATAHHCEQKFHD 70 *****************************998888888888888888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-4 | 14 | 54 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.19E-5 | 21 | 52 | No hit | No description |
Pfam | PF00249 | 1.9E-8 | 21 | 70 | IPR001005 | SANT/Myb domain |
SMART | SM00297 | 2.0E-11 | 334 | 444 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 1.44E-14 | 343 | 442 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.1E-13 | 347 | 442 | IPR001487 | Bromodomain |
Pfam | PF00439 | 1.6E-7 | 348 | 429 | IPR001487 | Bromodomain |
CDD | cd04369 | 2.56E-12 | 348 | 439 | No hit | No description |
PROSITE profile | PS50014 | 10.926 | 353 | 425 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MNDMENHQNQ NKNPNQDLQG WGTWEELLLA SAVDRHGFKD WDTIAMEVQS RTNRTSLLAT 60 AHHCEQKFHD LNRRFKDDVP PPQQNGDVSA VTAEDSDHVP WLDKLRKQRV AELRRDVQLS 120 DVSILSLQLQ VKKLEDEKAK ENEEKVETEP DLAVSGEGRL PENEKTGGDI DEPVPAIRRL 180 DESTTNTDKL LPAAGEESDR DNQSVNESNS TGSRFDALKT GEVDVKLGSG PGHGSGSVQV 240 KSGLNEPDQT GRKRKSVEEE SNNGSYDNNE AKAVTCESVP PSEERKVEDD SVTRSEGGGT 300 RESSEVQSSS SLSKTRRTQR RRKEVSGEDA KMENEDVAVV KSEPLFGVLE MIKRHQKFSL 360 FERRLEKNQD LDRYKNTVKR HVDLETIQLR VQEGHYSSGT NTFFLDLVTL FSNATVFFSR 420 GSPELRAAQQ LRRLILDEMK TFGQAQSNTI TQKSDSLPPN TPLSRPDSLS KHKPPILVCR 480 KRSSIPVKPS TTTFSHKGDH KPIINDKKER PSSDVKPTLK PSYSETDEEE PPKAKEKPVT 540 GARSRRSNKN LSSNASNKKP PSNSTPRTGS SANKPAETPK LKNKAEGVSD KKKNNGAAGF 600 LNRIKKNESV EVLRSGSGGG GGSSGSSKGG GGGGTNTKEQ KKVVNNGKGE KGKERASRYN 660 DGGGSGSGDK RNKNIESNSK RNVGRPPKKA AETVASTKRG RESSASGGKD KRPKKRSKK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 710 | 718 | KRPKKRSKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24681 | 0.0 | glandular trichome| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g060760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146756 | 0.0 | AC146756.17 Medicago truncatula clone mth2-15l17, complete sequence. | |||
GenBank | AC186643 | 0.0 | AC186643.3 Medicago truncatula chromosome 2 BAC clone mth2-58f20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003595781.1 | 0.0 | uncharacterized protein LOC11419562 | ||||
TrEMBL | G7IJ06 | 0.0 | G7IJ06_MEDTR; DNA-binding bromodomain protein, putative | ||||
STRING | AES66032 | 0.0 | (Medicago truncatula) | ||||
STRING | AES66037 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1870 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 2e-67 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g060760.1 |
Entrez Gene | 11419562 |
Publications ? help Back to Top | |||
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