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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Medtr2g047838.1 |
Common Name | MTR_2g047838 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family |
LSD |
Protein Properties |
Length: 174aa MW: 18723.7 Da PI: 8.4429 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Medtr2g047838.1 | genome | Mt | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 36.4 | 8.4e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C gCr++L YPrGA++V+Ca+C t+
Medtr2g047838.1 7 CTGCRNILLYPRGASNVCCAVCSTI 31
9*********************997 PP
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2 | zf-LSD1 | 38.3 | 2.2e-12 | 49 | 73 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+ rGA+ VRC++C+t+
Medtr2g047838.1 49 CGGCRTLLMHARGATTVRCSCCNTI 73
***********************97 PP
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3 | zf-LSD1 | 45.4 | 1.4e-14 | 87 | 110 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+Crt+L+YP GApsV+Ca+C+
Medtr2g047838.1 87 CGNCRTTLMYPHGAPSVKCAVCHY 110
**********************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 174 aa
Download sequence Send
to blast |
MRSHIMCTGC RNILLYPRGA SNVCCAVCST ITPVIPVLPP GMEMSQLYCG GCRTLLMHAR 60 GATTVRCSCC NTINLVPDSN QMNHIRCGNC RTTLMYPHGA PSVKCAVCHY ITNVDMTNGR 120 PPTPVRTPNE TTSSETSRPR FESQTVVVEN PMSVDSSGKL VSNVVVGVTT EKK*
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Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT136622 | 0.0 | BT136622.1 Medicago truncatula clone JCVI-FLMt-13K12 unknown mRNA. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Young ND, et al.
The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] - Wu J, et al.
OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. Plant J., 2014. 80(6): p. 1118-30 [PMID:25353370]
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