PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g030130.1
Common NameMTR_2g030130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91666.5 Da    PI: 6.457
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g030130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-181471457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Medtr2g030130.1 14 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 71
                     6789****************************************************97 PP
2START171.84.5e-541613692205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv++  +++g+e++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l  + +g  g+++l
  Medtr2g030130.1 161 VAEETLAEFLSKATGTAVDWVQMIGMKPGPESIGIVAVSRNSSGIAARACGLVSLEPT-KVAEILKDRLSWYRDCRCVDVLSIVPTGggGTIEL 253
                      6899******************************************************.8999999999************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      m+++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+    s++vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+
  Medtr2g030130.1 254 MYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLNASTGGPTgpsPSNFVRAEMLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRP 347
                      ******************************************9999997899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s+ + ++k + a+lq+ ++
  Medtr2g030130.1 348 LYESSKILAQKLTIAALQHIKQ 369
                      ******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.435872IPR001356Homeobox domain
SMARTSM003894.1E-151076IPR001356Homeobox domain
CDDcd000862.92E-161373No hitNo description
SuperFamilySSF466891.41E-161375IPR009057Homeodomain-like
PfamPF000465.0E-161471IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-181571IPR009057Homeodomain-like
CDDcd146862.34E-665104No hitNo description
PROSITE profilePS5084825.192151379IPR002913START domain
CDDcd088757.19E-69155371No hitNo description
Gene3DG3DSA:3.30.530.205.7E-21160343IPR023393START-like domain
SMARTSM002343.4E-49160370IPR002913START domain
SuperFamilySSF559612.75E-35161372No hitNo description
PfamPF018522.2E-51161369IPR002913START domain
SuperFamilySSF559613.43E-6408492No hitNo description
SuperFamilySSF559613.43E-6520594No hitNo description
PfamPF086705.2E-48691835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MALSMHKEMD AGKYVRYTPE QVEALERVYS ECPKPSSLRR QQLIRECPIL SNIEPKQIKV  60
WFQNRRCREK QRKEASRLQT VNRKLSAMNK LLMEENDRLQ KQVSHLVYEN GYMKQQIHTA  120
SAATTTDNSC DSVVMSGQNQ QQNPTQRPQR DANNPAGLLA VAEETLAEFL SKATGTAVDW  180
VQMIGMKPGP ESIGIVAVSR NSSGIAARAC GLVSLEPTKV AEILKDRLSW YRDCRCVDVL  240
SIVPTGGGGT IELMYMQTYA PTTLAAARDF WTLRYTTSLE DGSLVICERS LNASTGGPTG  300
PSPSNFVRAE MLPSGFLIRP CEGGGSIIHI VDHVDLDVWS VPEVLRPLYE SSKILAQKLT  360
IAALQHIKQI AQESSGEIQY GGGRQPAVLR TFSQRLCRGF NDAVNGFVDD GWSLLGNDGV  420
EDVTIAVNSS PNKFLGSNYS SMFPTFGGGV LCAKASMLLQ NVPPALLVRF LREHRSEWAD  480
YGVDAYSATC LKSSPYAVPC PRPGGFPSSQ VILPLAPTIE HEEFLEVVRI EGHAFSPEDV  540
ALARDMYLLQ LCSGIDENSV GACAQLVFAP IDESFADDAL LLPSGFRVIP LDPKSDGPTT  600
SRTLDLLEGS RNARPSGEGA GSNGYNLRSV LTIAFQFTFE NHLRDNVASM ARQYVRSVVA  660
SVQRVAMAIA PSRPGTQLGP KSLPGSPEAH ALARWISRSY RMHTGAELFR VESAASDAIL  720
KQLWHHSDAI MCCSVKTNAS PIFTFSNQAG LDMLETTLVA LQDIMLDKVL DEAGRKILCS  780
EFSKIMQQGY ASLPGGICVS SMNRPVSYEQ AIAWKVLNDD DANHCLAFMF INWSFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.99050.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g030130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594520.20.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLG7IKU00.0G7IKU0_MEDTR; Class III homeodomain leucine zipper protein
STRINGXP_004486450.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]