PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g090720.1 | ||||||||
Common Name | MTR_1g090720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 483aa MW: 53997.8 Da PI: 6.8884 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.6e-52 | 42 | 169 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiyk+ePwdL +++k++++ewyfFs dkky +g r nrat +gyWkatg+d++v Medtr1g090720.1 42 LAPGFRFHPTDEELVIYYLKRKVSGKPFRF-DAIAEVDIYKSEPWDLFdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATLQGYWKATGNDRPV 134 579**************************9.99**************5335889999************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++vglkktLvf++grap+g++t+Wvmheyrl Medtr1g090720.1 135 KH-DLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 169 **.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-59 | 35 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.334 | 42 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-27 | 44 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MGHEEPLLLP PPPSATTINP SPLTVSVPSP SASASAAPPT SLAPGFRFHP TDEELVIYYL 60 KRKVSGKPFR FDAIAEVDIY KSEPWDLFDK SRLKTRDQEW YFFSALDKKY GNGGRMNRAT 120 LQGYWKATGN DRPVKHDLRT VGLKKTLVFH SGRAPDGKRT NWVMHEYRLV EEELERERAG 180 AGPSQPQEAF VLCRVFHKNN IGPPNGQRYA PFVEEEWEEG SGMVPGAEPV SNGPVSNGPV 240 DRHLRLEWNG GVSCSEGRNH VVQDTQSNNK TPLDVNKLPI ETQNLLAVCK RESMTEFSSP 300 EKDDSKHMHV DDEYPLPPTD NPKPIPQIYK RRRYNLNSNH SNVSGDSFHP NSQDPCSSTI 360 TTAATTLPTT AAAVTTAKPA PKKHFLSALV EFSLLESLES KKENHTSVQP ADFDLANLES 420 CVPPSVAKYI KYLQSETQKL GVEKETMRFE LTSAQTMINI LQSRVENLSK ENEEMKMMMR 480 NP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-46 | 41 | 200 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-46 | 41 | 200 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-46 | 41 | 200 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-46 | 41 | 200 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-46 | 41 | 200 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-46 | 41 | 200 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-46 | 41 | 200 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-46 | 41 | 200 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.916 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g090720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140184 | 0.0 | BT140184.1 Medicago truncatula clone JCVI-FLMt-15D19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469278.1 | 0.0 | NAC domain containing protein 50 | ||||
Swissprot | Q9SQX9 | 1e-121 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | A0A072VNW3 | 0.0 | A0A072VNW3_MEDTR; NAC transcription factor-like protein | ||||
STRING | XP_004496131.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8189 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 8e-93 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g090720.1 |
Entrez Gene | 25484825 |
Publications ? help Back to Top | |||
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