PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090720.1
Common NameMTR_1g090720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 483aa    MW: 53997.8 Da    PI: 6.8884
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.6e-52421691128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiyk+ePwdL   +++k++++ewyfFs  dkky +g r nrat +gyWkatg+d++v
  Medtr1g090720.1  42 LAPGFRFHPTDEELVIYYLKRKVSGKPFRF-DAIAEVDIYKSEPWDLFdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATLQGYWKATGNDRPV 134
                      579**************************9.99**************5335889999************************************* PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ + ++vglkktLvf++grap+g++t+Wvmheyrl
  Medtr1g090720.1 135 KH-DLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 169
                      **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5935199IPR003441NAC domain
PROSITE profilePS5100557.33442198IPR003441NAC domain
PfamPF023658.5E-2744169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MGHEEPLLLP PPPSATTINP SPLTVSVPSP SASASAAPPT SLAPGFRFHP TDEELVIYYL  60
KRKVSGKPFR FDAIAEVDIY KSEPWDLFDK SRLKTRDQEW YFFSALDKKY GNGGRMNRAT  120
LQGYWKATGN DRPVKHDLRT VGLKKTLVFH SGRAPDGKRT NWVMHEYRLV EEELERERAG  180
AGPSQPQEAF VLCRVFHKNN IGPPNGQRYA PFVEEEWEEG SGMVPGAEPV SNGPVSNGPV  240
DRHLRLEWNG GVSCSEGRNH VVQDTQSNNK TPLDVNKLPI ETQNLLAVCK RESMTEFSSP  300
EKDDSKHMHV DDEYPLPPTD NPKPIPQIYK RRRYNLNSNH SNVSGDSFHP NSQDPCSSTI  360
TTAATTLPTT AAAVTTAKPA PKKHFLSALV EFSLLESLES KKENHTSVQP ADFDLANLES  420
CVPPSVAKYI KYLQSETQKL GVEKETMRFE LTSAQTMINI LQSRVENLSK ENEEMKMMMR  480
NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-464120019170NAC domain-containing protein 19
3swm_B1e-464120019170NAC domain-containing protein 19
3swm_C1e-464120019170NAC domain-containing protein 19
3swm_D1e-464120019170NAC domain-containing protein 19
3swp_A1e-464120019170NAC domain-containing protein 19
3swp_B1e-464120019170NAC domain-containing protein 19
3swp_C1e-464120019170NAC domain-containing protein 19
3swp_D1e-464120019170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.9160.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1401840.0BT140184.1 Medicago truncatula clone JCVI-FLMt-15D19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469278.10.0NAC domain containing protein 50
SwissprotQ9SQX91e-121NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A072VNW30.0A0A072VNW3_MEDTR; NAC transcription factor-like protein
STRINGXP_004496131.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.18e-93NAC domain containing protein 50
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]