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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g090703.1 | ||||||||
Common Name | MTR_1g090703 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 356aa MW: 39369.4 Da PI: 7.1257 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00085 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Medtr1g090703.1 156 YECKTCNRTFPSFQALGGHRASH 178 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 234 | 256 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Medtr1g090703.1 234 HECSICGSEFTSGQALGGHMRRH 256 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.3E-13 | 155 | 180 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.03E-8 | 155 | 178 | No hit | No description |
SMART | SM00355 | 0.052 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 156 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.03E-8 | 229 | 256 | No hit | No description |
Pfam | PF13912 | 8.6E-12 | 233 | 258 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 234 | 256 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 234 | 256 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 236 | 256 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEPAPEQPEQ QISLASREIT NIIKGKRTKR VRPQSPIPFS ITANSSTGEG GGGGGEREDC 60 NNVDDVNNNT IINTNNNNTS PTTSYVEEKQ DSTVVIDEEY DMANCLILLA QGQAKESSTK 120 NTDDLDGGMM NYTKYSSRKF MEAATLDSGR AGFYVYECKT CNRTFPSFQA LGGHRASHKK 180 PKALAIAQEK KHLYDDDQEF QFKPNHKSIS LQLNNNGKGN LHGGSNNNNK SKVHECSICG 240 SEFTSGQALG GHMRRHRAPV GTSAANTTLS LTTMALEPDE DHPRKKRNVL SLDLDLNLPA 300 PEDDHRESKF AFASKQHQQQ QQQNGQKQQQ QQQQQQQKQQ TNLVFSAPAL VDCHY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g090703.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT145899 | 0.0 | BT145899.1 Medicago truncatula clone JCVI-FLMt-14I9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469274.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A072VNA7 | 0.0 | A0A072VNA7_MEDTR; C2H2-type zinc finger protein | ||||
STRING | XP_007144239.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 9e-64 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g090703.1 |
Entrez Gene | 25484821 |
Publications ? help Back to Top | |||
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