PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g040430.1 | ||||||||
Common Name | MTR_1g040430, SERF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22904.7 Da PI: 7.4103 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 110 | 160 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps k r++lg+f+ + +Aaka++ a+ +++g Medtr1g040430.1 110 RYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFDCEIDAAKAYDSAAFRMRG 160 7********.**********854..34**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-13 | 110 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-31 | 110 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 110 | 170 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-33 | 110 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.986 | 110 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-13 | 111 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.58E-23 | 118 | 168 | No hit | No description |
PRINTS | PR00367 | 2.5E-13 | 150 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTTTKETSNL DLIRHHLLGD NISDPFLHPV KLENPLPEFD FSSYISENST FFTFLENYDL 60 IADMEFFTHT SSSKETTPSK EIKDEVAIAT TMVSSKKVKK EEECVDETRR YRGVRRRPWG 120 KFAAEIRDPS RKGSRVWLGT FDCEIDAAKA YDSAAFRMRG QKAILNFPLE AGVCDPKPNS 180 CGRKRRRESE IEGTRCSSSS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-28 | 109 | 169 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 186 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15007 | 0.0 | glandular trichome| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g040430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU682349 | 0.0 | CU682349.14 M.truncatula DNA sequence from clone MTH2-90A5 on chromosome 1, complete sequence. | |||
GenBank | JF357924 | 0.0 | JF357924.1 Medicago truncatula ethylene response factor (SERF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589850.2 | 1e-148 | ethylene-responsive transcription factor ERF107 | ||||
TrEMBL | B7FKR1 | 1e-147 | B7FKR1_MEDTR; Ethylene response factor | ||||
STRING | AES60101 | 1e-143 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-30 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g040430.1 |
Entrez Gene | 11424269 |
Publications ? help Back to Top | |||
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