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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0168s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | NF-YC | ||||||||
Protein Properties | Length: 156aa MW: 17245 Da PI: 4.2927 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 52.7 | 9.4e-17 | 53 | 139 | 12 | 98 |
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 k++ ++ ++P++r+++++k++ d++ + ea l++ka elf+ ++ ++ + e +r+tl+ d+a+ vt ++ dfl d vp+ Mapoly0168s0007.1.p 53 KSASLNALAFPISRVRRLVKSEGDMQWVGVEAGFLIAKAAELFLEKFVEEAFEKMTEEDRTTLHYKDLAEHVTCAERMDFLADFVPE 139 566777889****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.8E-21 | 62 | 139 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.6E-12 | 62 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 7.21E-16 | 71 | 140 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MSSSDESDSG RRSSDAEEDE KMDEEKEEVD SQSQDDSPSP SPVRSQTHSA RSKSASLNAL 60 AFPISRVRRL VKSEGDMQWV GVEAGFLIAK AAELFLEKFV EEAFEKMTEE DRTTLHYKDL 120 AEHVTCAERM DFLADFVPEM VLASTATSAK AMADR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A176VIQ0 | 1e-107 | A0A176VIQ0_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W337 | 1e-107 | A0A2R6W337_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8670 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-18 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0168s0007.1.p |