PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0123s0012.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family MYB
Protein Properties Length: 354aa    MW: 39397.9 Da    PI: 6.834
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0123s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.4e-1566109448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +T++Ede l ++vk++G++ W+ I+++m  ++t+ +c+ rw++yl
  Mapoly0123s0012.1.p  66 FTEQEDEFLRELVKRHGTKKWHIISAKMH-NKTPRECRKRWRTYL 109
                          9****************************.*************97 PP
2Myb_DNA-binding54.62.5e-17115157145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +W++eEd ll+++++ +G++ W+ Ia++++ gRt++ +k+r++
  Mapoly0123s0012.1.p 115 KSSWSEEEDRLLIEGHNAYGNR-WTEIAKMVP-GRTDNAVKNRYN 157
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.61358109IPR017930Myb domain
SMARTSM007172.9E-1462111IPR001005SANT/Myb domain
PfamPF002494.8E-1465109IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2965156IPR009057Homeodomain-like
CDDcd001675.43E-1465109No hitNo description
Gene3DG3DSA:1.10.10.604.4E-1566115IPR009057Homeodomain-like
PROSITE profilePS5129421.071110164IPR017930Myb domain
SMARTSM007171.2E-18114162IPR001005SANT/Myb domain
PfamPF002492.1E-16115157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-20116163IPR009057Homeodomain-like
CDDcd001671.20E-14117159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAGEDFPREE DSKQGYHAKM QALTCNDSIM LRAAGHTLQS CFSPETPALP DSPTDSHMSM  60
DPPATFTEQE DEFLRELVKR HGTKKWHIIS AKMHNKTPRE CRKRWRTYLH MCMNKSSWSE  120
EEDRLLIEGH NAYGNRWTEI AKMVPGRTDN AVKNRYNALC KKRSHRSSKA VSLGGMPVME  180
TSDETDMLMK DMAKRAKKLK SRDEGLGLYI PSVNRSLGAK HNLSIEIPGD SDVLRAEGSR  240
KPLTALNMSD STSLQELRDA GDSNSPRDGQ VDMDEVMGWL LARTPTPTCN GSGNSNSTVT  300
SSASTSPSRP NEHIYSSDQG NHQVTSLLKD SCQKCTSFTS STSHQLPDED DEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-306616310107B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KKRSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024527876.13e-70transcription factor MYB119
TrEMBLA0A2R6W9I70.0A0A2R6W9I7_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54161421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.25e-35MYB family protein