PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0096s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | C2H2 | ||||||||
Protein Properties | Length: 448aa MW: 49081.2 Da PI: 8.2116 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9e-06 | 283 | 302 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ Mapoly0096s0050.1.p 283 FSCPVCSKTFNRYNNMQMHM 302 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00043 | 367 | 389 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ Mapoly0096s0050.1.p 367 FMCRKCNKAFAVRGDWRTHEKNC 389 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.99E-5 | 279 | 305 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-6 | 283 | 302 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.054 | 283 | 305 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 283 | 310 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 285 | 305 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 330 | 362 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.55E-6 | 349 | 387 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 354 | 387 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 56 | 367 | 387 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:1990058 | Biological Process | fruit replum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MSSRYHAQSS TVAVPRALSS ITAHPLPFCE WLKPHLAPPV TQLPVAIPFT TEDNAGTSFS 60 VSGPSSGADS PASGASHYNM FGGAHHQFFQ TATTHYNHQR RCPSPGPSRT AQPLPFLSLS 120 PPTNNNNNNT SGGSSSNNHH HQHHNSHNSH GSSGAAAAST TTASKYQQSQ NQNHNHNHNH 180 NQEEVPLRTA ILLPSASSSG PVDDEPDENV TVALHIGPPT SSDCSLMSSL RSSVVEGMMG 240 NLNYESPMGG LDKDRFNRAR GRLPDGQYWI PTPAQILVGP TQFSCPVCSK TFNRYNNMQM 300 HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAQGCRNNI DHPRAKPLKD FRTLQTHYKR 360 KHGQKPFMCR KCNKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IRAFGNGHAP 420 HGVDSCEDEE ENASEDDADE DMSAGSQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071104 | 1e-137 | AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024385058.1 | 1e-148 | zinc finger protein WIP6-like | ||||
Refseq | XP_024385059.1 | 1e-148 | zinc finger protein WIP6-like | ||||
Swissprot | Q9SVY1 | 1e-117 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A176WN28 | 0.0 | A0A176WN28_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A1S5T472 | 0.0 | A0A1S5T472_MARPO; WIP | ||||
STRING | PP1S203_59V6.1 | 1e-147 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-112 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0096s0050.1.p |
Publications ? help Back to Top | |||
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