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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0007s0265.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | MYB | ||||||||
Protein Properties | Length: 681aa MW: 77333.8 Da PI: 4.7486 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.3e-15 | 22 | 66 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEdell + v+ +G ++W+++a+ ++ g+t qc+ rw+++l Mapoly0007s0265.1.p 22 VWSQEEDELLREQVRVYGIERWARVAEGLP-GKTSRQCRRRWNMFL 66 6*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 72 | 114 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg WT eEd ll++ + ++G++ W+ Ia+ ++ gRt++ +k+r+ Mapoly0007s0265.1.p 72 RGGWTDEEDNLLLENHDRFGNR-WTEIAKNLP-GRTDNAVKNRYS 114 789*******************.*********.**********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.875 | 11 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.52E-26 | 19 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-13 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-13 | 22 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-13 | 23 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-19 | 23 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.947 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 72 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.13E-11 | 75 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 78 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MKPSGARRFD NNEVRRGRPL VVWSQEEDEL LREQVRVYGI ERWARVAEGL PGKTSRQCRR 60 RWNMFLNVVS KRGGWTDEED NLLLENHDRF GNRWTEIAKN LPGRTDNAVK NRYSVLCKKQ 120 TRDTERPLVG RYGDHGTDVH SGSIGGARTS EPSEETLKLW RNLERRVWLL NLNQQEPTSS 180 LSDMNERLRD SFESDLQTCK DSLQCAQEAH NTCMTVEGSQ VGPLYYYPEP LIEGGTQPSE 240 GYLSAVYDVN SHSELLEGSL SGHPRAAAEN SFLEQRIATD FSSIHQDRPS AENLEQVLAM 300 YEEPSACDDS SSHNRRPLVE SLQQSKRLKV VDASNELMGC QKPSTVSNVP WNLPNEEELP 360 RSYFSQERAM SDLLTWWEER DITAMMSRAA YQGRDILRDF EEFKQTLVAE NKENSEGSGI 420 PPKVHYIISD EQWQLVGHTM RDQRRKIIWS CISGSESEAK RQHIMENLEK IGSNIRLLRL 480 DIDSLASQAL KVYPKLQPFA KKPTFKSTEQ FGYGENEDYQ AGHKGGGLLL LQIMPISQVG 540 QDFNRRVRIP SRSMSELNAE REHKGGQTGH DWSSAICVYP DICESELVDQ VLEHELEDAK 600 ALNPSSQTAD ISADYSEIEV RDFIYALDIS FMDQDSSSHF GSEIAMGNEV DTATRSPLSD 660 TLPAEESSEA ESFEEDLLHL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-26 | 23 | 121 | 30 | 128 | MYB TRANSFORMING PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XP89 | 0.0 | A0A2R6XP89_MARPO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5416 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 1e-36 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0007s0265.1.p |