PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G100700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 453aa    MW: 50873 Da    PI: 4.9768
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G100700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.18.9e-361172082102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Flkk++e++ed+e+++++sw++n +sf+v+d +ef+k++LpkyFkh nf+SF+RQLn+YgF+k++ ++         weF+++ F+ gkk
  Manes.16G100700.1.p 117 FLKKTFEMVEDPETDSIVSWNKNRDSFIVWDAHEFSKHLLPKYFKHCNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFRGGKK 197
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++ikr+++
  Manes.16G100700.1.p 198 HLLKNIKRRSR 208
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-38113206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-59113206IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-35113206IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-31117206IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-18117140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-18155167IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340156180IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-18168180IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLLVRDPCPV TCSACGKASH GGPPSSPSSS IKTVDIQKAA AATETVKVVM VKEEEEEEDD  60
EDTGAIGVAH YGNCLNGGGG GGVDGGGVHS NGSSSASSSV DLPKPMQGLH ETGPPPFLKK  120
TFEMVEDPET DSIVSWNKNR DSFIVWDAHE FSKHLLPKYF KHCNFSSFIR QLNTYGFRKI  180
DPDRWEFANE GFRGGKKHLL KNIKRRSRYN KQQQGGANGG DLAKPGMEIE LESLKNDQEL  240
LKVEILKLRQ QQESSENQLS IVDQRTRVAE CKQLQMFIFL SKVAKHRSFI QNLFQKRKQQ  300
RELEGVEFKK RRLLQTQDPE TSPDPADANQ TVNYRYQAQE QLATMQTELA EILREDTEIN  360
PMSKIFESPM NDEFCSPIQD QKDNFMCGTN DSESVYHLMS EKLLDDNAVF ENLVEDLEMN  420
DSKFYLELED LIGKSRSWGG YVTEVVEHAG CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-24922064129Heat shock factor protein 1
5d5v_B9e-24922064129Heat shock factor protein 1
5d5v_D9e-24922064129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205LKNIKRR
2295311KRKQQRELEGVEFKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G100700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597893.10.0heat shock factor protein HSF30-like
TrEMBLA0A2C9UAL20.0A0A2C9UAL2_MANES; Uncharacterized protein
STRINGcassava4.1_005870m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.19e-83heat shock transcription factor A2