PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.16G081500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 346aa    MW: 39408.2 Da    PI: 5.1035
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.16G081500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34471392103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k+ye++ed+ +++++sw++  n f+v+d+ +f++++LpkyFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F  g+k
  Manes.16G081500.1.p  47 FMTKTYEMVEDPLTDSVVSWNRGRNGFIVWDSYKFSTTLLPKYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFMGGQK 127
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr++++
  Manes.16G081500.1.p 128 HLLKTIKRRRQQ 139
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.3E-5743136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-3343136IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-3643136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-2947136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-184770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-188597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEGVVIKED KETVVAYAVG VVSSSSSSSS FQPQQMEVLH EVGPPPFMTK TYEMVEDPLT  60
DSVVSWNRGR NGFIVWDSYK FSTTLLPKYF KHSNFSSFIR QLNTYGFRKI DPDRWEFANE  120
GFMGGQKHLL KTIKRRRQQQ SGLHDKVGEF GLEGELERLR RDRNVLIAEI LRLRQQQKQS  180
REQISEMQDK LQNTQRKQQQ IILFLAKALS NPFLMQQFSE RSIQRREVRD VEIGSKRRLT  240
ASSSVQNLQD KAASVAMNVG KIVEYKNQEL GTIETEIDAF LSAALDGESS SDVRDPVAGS  300
NSVDNLGSRN ETIWEELLND DIIASNPSEK VISDNKPEFD MEVED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-234513618120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKTIKRR
2157162RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.16G081500.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597018.10.0heat shock factor protein HSF30
SwissprotP411521e-115HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2C9UAT80.0A0A2C9UAT8_MANES; Uncharacterized protein
STRINGcassava4.1_027657m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-94heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]