PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G161500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 368aa    MW: 40362.5 Da    PI: 6.4085
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G161500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.2e-071960338
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         +r+C+ ++   +  fC+ ++ +lC +C +++H        H+
  Manes.14G161500.1.p 19 ARCCDSCKTATAAAFCRADSAFLCLNCDSKIHAAnklvsrHE 60
                         689*****************************6555666665 PP
2zf-B_box27.37.7e-0962107342
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Manes.14G161500.1.p  62 VWMCEVCEQAPAAVNCKADAASLCVTCDADIHSAnplarrHERVPV 107
                          689*****************************66899999999986 PP
3CCT682.5e-23294337144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRYkeKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k++
  Manes.14G161500.1.p 294 REARVLRYKEKRKNRKFKKTIRYASRKAYAETRPRIKGRFAKRT 337
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2391764IPR000315B-box-type zinc finger
SMARTSM003364.3E-121764IPR000315B-box-type zinc finger
PfamPF006434.0E-51961IPR000315B-box-type zinc finger
CDDcd000213.11E-72264No hitNo description
PROSITE profilePS5011910.55260107IPR000315B-box-type zinc finger
PfamPF006438.0E-762107IPR000315B-box-type zinc finger
CDDcd000211.32E-763107No hitNo description
SMARTSM003365.4E-965107IPR000315B-box-type zinc finger
PfamPF062031.1E-17294336IPR010402CCT domain
PROSITE profilePS5101716.479294336IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGVEIQGLDT CTAGWTVSAR CCDSCKTATA AAFCRADSAF LCLNCDSKIH AANKLVSRHE  60
RVWMCEVCEQ APAAVNCKAD AASLCVTCDA DIHSANPLAR RHERVPVEPF FDSAESIVKS  120
SPFNFLVPCD QNGGPTGYHL HHEDDVEGFS WLLPNPTTLS SKLCMENPEM KAAGDLIFPE  180
TDPFLDMEFH PSHSAATDSV VPVQTKPAPI PVINNEVCYD VDFCRSKLSS FNYTTQSLSQ  240
SISSSSLDVV VPDGNSMSDI SYPFGRNLNT GADPSAPIST STTNQAAQMC GIDREARVLR  300
YKEKRKNRKF KKTIRYASRK AYAETRPRIK GRFAKRTEIE SEMDRLYNSP SSVSFMSDGQ  360
YGVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G161500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592778.10.0zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-121COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2C9UP470.0A0A2C9UP47_MANES; Uncharacterized protein
STRINGcassava4.1_010137m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-107CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]