PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G122900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93036 Da    PI: 6.1751
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G122900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-181977357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Manes.14G122900.1.p 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                         6789*****************************************************97 PP
2START178.15.2e-561693762204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g
  Manes.14G122900.1.p 169 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPM-KVAEILKDRPSWFRDCRCLDVLSVIPTGngG 257
                          68999*****************************************************.8888888888********************* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l++++++a+++l++ Rd++++Ry+ +l++g++vi+++S++  +  p+    ss+vRae+lpSg+li+p+++g+s +++v+hvdl+++
  Manes.14G122900.1.p 258 TIELIYMQTYAPTTLAAaRDYWTLRYTTTLEDGSLVICERSLTTATGGPTgppASSFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAW 347
                          *********************************************99999999************************************* PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s+ + ++k+++a+l++ +
  Manes.14G122900.1.p 348 SVPEVLRPLYESSKILAQKMTMAALRHIR 376
                          *************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-19477IPR009057Homeodomain-like
PROSITE profilePS5007115.6611478IPR001356Homeobox domain
SMARTSM003896.6E-151682IPR001356Homeobox domain
PfamPF000466.4E-161977IPR001356Homeobox domain
CDDcd000864.07E-161979No hitNo description
SuperFamilySSF466892.4E-161981IPR009057Homeodomain-like
CDDcd146862.01E-671109No hitNo description
PROSITE profilePS5084826.025159387IPR002913START domain
CDDcd088755.47E-73163379No hitNo description
Gene3DG3DSA:3.30.530.204.1E-22167373IPR023393START-like domain
SMARTSM002347.7E-55168378IPR002913START domain
PfamPF018521.7E-53169376IPR002913START domain
SuperFamilySSF559611.06E-38169380No hitNo description
SuperFamilySSF559619.06E-5416501No hitNo description
SuperFamilySSF559619.06E-5529600No hitNo description
PfamPF086709.6E-52703847IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MALSMHNKEG SNKQMDTSKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVT QLVYENGYMR  120
QQLQNASATT TDNSCESVVV SGQQQQQQQN PTPQRPQRDA NNPAGLLAIA EETLAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLEPMKVAE ILKDRPSWFR  240
DCRCLDVLSV IPTGNGGTIE LIYMQTYAPT TLAAARDYWT LRYTTTLEDG SLVICERSLT  300
TATGGPTGPP ASSFVRAEML PSGYLIRPCE GGGSIIHIVD HVDLDAWSVP EVLRPLYESS  360
KILAQKMTMA ALRHIRQIAQ ESSGEIQYGG GRQPAVLRTF SQRLCRGFND AVNGFADDGW  420
SLLGGDGVED VTIAINSSPN KFLGSQYNAS MFPTFGGGVL CAKASMLLQN VPPALLVRFL  480
REHRSEWADY GVDTYSAACL KASPYAVPCA RPGGFPSSQV ILPLAHTVEH EEFLEVVRLE  540
GHAFSPEDVA LARDMYLLQL CSGVDENAIG ACAQLVFAPI DESFADDAPL LPSGFRVIPL  600
DVKTDGPAAT RTLDLASTLE VGGGGARPSS EVDTNNCNLR SVLTIAFQFT FENHLRDNVA  660
AMARQYVRSV VGSVQRVAMA ISPSWVGSHV GPKSLPGSPE ALTLARWICR SYRIHTGGDL  720
FQVDSQAGDS LLKQLWHHSD AIMCCSLKTN ASPVFTFANQ AGLDLLETTL VALQDIMLDK  780
ILDEAGRKTL CSEFSKIMQQ GFAYLPSGIC VSSMGRPVSY EQAIAWKVLN DDDSNHCLAF  840
MFMNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G122900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592762.10.0homeobox-leucine zipper protein ATHB-14
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2C9UL160.0A0A2C9UL16_MANES; Uncharacterized protein
STRINGcassava4.1_001618m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]