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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G044200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LFY | ||||||||
Protein Properties | Length: 382aa MW: 43109.6 Da PI: 7.3272 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 642.1 | 8e-196 | 1 | 366 | 1 | 385 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlm 90 mdpe f+aslfkwdpra + ++p+rl+e a + +p +a+a+ r+l +leelf+ayGvry+t+akiaelGftvstL+dmkdee+d++m Manes.14G044200.1.p 1 MDPEVFTASLFKWDPRALV-PAPNRLFEAVAPPLHP-GTAHAVRPRELCGLEELFQAYGVRYYTAAKIAELGFTVSTLLDMKDEEIDEMM 88 9**************9765.7889999877766666.677778888899***************************************** PP FLO_LFY 91 kslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekk 180 +sls+ifr+dllvGeryGik+avraerrrleee+ ++rr+lls d+++a+dalsqeglseep+q+ekeaagsgg+g +e++a e Manes.14G044200.1.p 89 NSLSQIFRWDLLVGERYGIKSAVRAERRRLEEED--SRRRHLLSGDTTKAIDALSQEGLSEEPMQKEKEAAGSGGGG--MSEVAAGE--- 171 ********************************88..99999********************************9999..34444333... PP FLO_LFY 181 seeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkia 270 +k+++ +++rk +++ d d+++ e+e++e++g++g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL++vq+ a Manes.14G044200.1.p 172 ---RKQQQ---QRRRKGQRK---VVDIDQDD-ENENDENGGAGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIHVQSFA 251 ...22222...223333333...23444443.344566778889********************************************** PP FLO_LFY 271 kerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfn 360 k+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrr fkergenvGawrqacykplv+iaa+qgwdida+fn Manes.14G044200.1.p 252 KDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVNIAASQGWDIDAIFN 341 ****************************************************************************************** PP FLO_LFY 361 ahprLsiWYvPtkLrqLChlerska 385 ahprL+iWYvPtkLrqLCh+er++a Manes.14G044200.1.p 342 AHPRLAIWYVPTKLRQLCHAERNSA 366 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 6.1E-204 | 1 | 367 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDPEVFTASL FKWDPRALVP APNRLFEAVA PPLHPGTAHA VRPRELCGLE ELFQAYGVRY 60 YTAAKIAELG FTVSTLLDMK DEEIDEMMNS LSQIFRWDLL VGERYGIKSA VRAERRRLEE 120 EDSRRRHLLS GDTTKAIDAL SQEGLSEEPM QKEKEAAGSG GGGMSEVAAG ERKQQQQRRR 180 KGQRKVVDID QDDENENDEN GGAGGYERQR EHPFIVTEPG EVARGKKNGL DYLFHLYEQC 240 REFLIHVQSF AKDRGEKCPT KVTNQVFRYA KKAGASYINK PKMRHYVHCY ALHCLDEEAS 300 NALRRVFKER GENVGAWRQA CYKPLVNIAA SQGWDIDAIF NAHPRLAIWY VPTKLRQLCH 360 AERNSAAPSS CVSSGGDHLP F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-110 | 205 | 381 | 2 | 194 | PROTEIN LEAFY |
2vy2_A | 1e-110 | 205 | 381 | 2 | 194 | PROTEIN LEAFY |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G044200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634810.1 | 0.0 | floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | A0A2C9UIR5 | 0.0 | A0A2C9UIR5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032718m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-109 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G044200.1.p |
Publications ? help Back to Top | |||
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