PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

ERF

Protein Properties

Length: 359aa MW: 39861.4 Da PI: 6.288

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G093300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	66.1	6.9e-21	155	205	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Manes.13G093300.1.p 155 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 205 59****9.******955...5************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.04E-34	154	214	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.7E-32	155	213	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-23	155	213	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.261	155	212	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-37	155	218	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	156	167	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-14	156	205	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	178	194	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAAATDFYSS STTPGFSIID PCREELMKAL EPFMKTISLS PSASPSSPYD SPISFQPNLC 60 SDFCSPSSTH MVSQEFCKNN HMGLEPRGSI GLNHLTPSQI LQIQAQIHLQ QQQQQQQIAN 120 LTSTSHLLYN QRPSYLSPKP VLMKQSASTP KPTKLYRGVR QRHWGKWVAE IRLPRNRTRL 180 WLGTFDTAEE AALAYDKAAY KLRGEFARLN FPHLHHQGAH VCGEFGDYKP LHSSVDAKLQ 240 AICESLANSQ KQGKTGERIY ADDSKTILSA SSQAKKEDDY SMKGELKREF DTYGVEDSKV 300 EISSASPAPA SSDESSAGSS SPQSEISFWD FSDSSQWDET ENFSLEKYPS AEIDWAAL*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAAATDFYSS STTPGFSIID PCREELMKAL EPFMKTISLS PSASPSSPYD SPISFQPNLC  60
SDFCSPSSTH MVSQEFCKNN HMGLEPRGSI GLNHLTPSQI LQIQAQIHLQ QQQQQQQIAN  120
LTSTSHLLYN QRPSYLSPKP VLMKQSASTP KPTKLYRGVR QRHWGKWVAE IRLPRNRTRL  180
WLGTFDTAEE AALAYDKAAY KLRGEFARLN FPHLHHQGAH VCGEFGDYKP LHSSVDAKLQ  240
AICESLANSQ KQGKTGERIY ADDSKTILSA SSQAKKEDDY SMKGELKREF DTYGVEDSKV  300
EISSASPAPA SSDESSAGSS SPQSEISFWD FSDSSQWDET ENFSLEKYPS AEIDWAAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-21	154	212	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G093300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633104.1	0.0	ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q8H1E4	1e-85	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A2C9UQC7	0.0	A0A2C9UQC7_MANES; Uncharacterized protein
STRING	cassava4.1_010526m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1057	32	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	2e-54	related to AP2 4

Link Out ? help Back to Top
Phytozome	Manes.13G093300.1.p

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]