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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G136800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 40158.5 Da PI: 6.5145 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.3e-21 | 163 | 213 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge Manes.12G136800.1.p 163 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 213 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.67E-34 | 162 | 222 | No hit | No description |
SMART | SM00380 | 4.4E-38 | 163 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-23 | 163 | 221 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.235 | 163 | 220 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 163 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 164 | 175 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-14 | 164 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 186 | 202 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MAAAIDFYNS SVTPGFSIID PCREELMKAL EPFMKSASST SPSYTSPSPS ASPSSSSSFS 60 SYPSCSYDSP ISSQPNFYSD FSSPSNYNQM GFEQTGSIGL NHLTPSQILQ IQAQIHLQQQ 120 QQQRQIANLT TTSHLLHNQR LNYLAPKPVP MKQSASPPKP TKLYRGVRQR HWGKWVAEIR 180 LPKNRTRLWL GTFDTAEEAA LAYDKAAYKL RGEFARLNFP HLRHQGAHVS GEFGDYKPLH 240 SSVDAKLQAI CQSLANSQKH GKTEEQSSAD DSKKILPAPT QAKKQDDYSI KSELKKEFET 300 FGVEDYKVDN SAASSDESLA GSSSPQSEIS FLDFSDSSQW DETENFSLEK YPSVEIDWAA 360 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 162 | 220 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G136800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630596.1 | 0.0 | ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 5e-88 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2C9UWE5 | 0.0 | A0A2C9UWE5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010367m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-64 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G136800.1.p |
Publications ? help Back to Top | |||
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