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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G119300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 198aa MW: 21694.8 Da PI: 9.5233 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 5.8e-14 | 10 | 47 | 8 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 nr+ +fsk r g +KKA+EL+ LC+ e a++++s++gk Manes.12G119300.1.p 10 NRKASFSKCRPGTFKKANELCSLCAFETALVVLSPDGK 47 9************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-6 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.15E-12 | 2 | 54 | No hit | No description |
SuperFamily | SSF55455 | 8.63E-13 | 8 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.89 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-13 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRKKSQGGN RKASFSKCRP GTFKKANELC SLCAFETALV VLSPDGKSFP FDHPCYEAIR 60 KKLANPGDPN REFAQHLAEH EATICELQKQ YAVSLQELDA AQKRGEKLKR MREALGKTAI 120 NPLWERPIDE LSLEELTTLK TLMEQVKGKL VQRLGKLTIQ APNAFASSSR SSAEAIDPNI 180 TIPNGVGAFS HGISHGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G119300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630375.1 | 1e-146 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2C9UVG9 | 1e-144 | A0A2C9UVG9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_030994m | 1e-145 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16391 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-23 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G119300.1.p |