PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G163400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 245aa MW: 27699.1 Da PI: 8.1962

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G163400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.7	8.1e-48	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Pt+eelv++yL++k++gk+ el++vi+ +diy++ePw+Lp+ ++++++++w+fF++r++++a+g r++r+t+sgyWkat Manes.11G163400.1.p 4 LPPGFRFYPTEEELVSFYLHNKLDGKRQELHRVIPVIDIYNIEPWNLPMlageRCRGDTEQWFFFTPRQEREARGGRPSRTTASGYWKAT 93 79**************************99************656666666888************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++++g+kkt+vfykg+ap g+kt+W m+eyr+ Manes.11G163400.1.p 94 GSPGYVYSSDSRVIGVKKTMVFYKGKAPAGRKTKWKMNEYRA 135 **************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-49	2	160	IPR003441	NAC domain
PROSITE profile	PS51005	49.808	4	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MVELPPGFRF YPTEEELVSF YLHNKLDGKR QELHRVIPVI DIYNIEPWNL PMLAGERCRG 60 DTEQWFFFTP RQEREARGGR PSRTTASGYW KATGSPGYVY SSDSRVIGVK KTMVFYKGKA 120 PAGRKTKWKM NEYRAIEGVA DSSSTSVPKL RHEFSLCRVY VISGSFRAFD RRPIEAAAEY 180 AQLPGEAATT AAQATRMVEN TSSTENSNSG GDHVDPPGTE GSAHWEMVND LVQPPWDWER 240 LKWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-38	2	160	18	166	NAC domain-containing protein 19
3swm_B	2e-38	2	160	18	166	NAC domain-containing protein 19
3swm_C	2e-38	2	160	18	166	NAC domain-containing protein 19
3swm_D	2e-38	2	160	18	166	NAC domain-containing protein 19
3swp_A	2e-38	2	160	18	166	NAC domain-containing protein 19
3swp_B	2e-38	2	160	18	166	NAC domain-containing protein 19
3swp_C	2e-38	2	160	18	166	NAC domain-containing protein 19
3swp_D	2e-38	2	160	18	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G163400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629180.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-99	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2C9V1V9	0.0	A0A2C9V1V9_MANES; Uncharacterized protein
STRING	cassava4.1_022893m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	2e-99	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Manes.11G163400.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]