PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.11G131800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

WOX

Protein Properties

Length: 209aa MW: 24085.3 Da PI: 9.6993

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G131800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.4	2.1e-12	11	47	25	57
--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 25 psaeereeLAkkl....gLterqVkvWFqNrRakekk 57 p ++++++++++l +++e++V++WFqNr+a++++ Manes.11G131800.1.p 11 PGRTQIQQITSRLkqygHIEEKNVFYWFQNRKARQRQ 47 8899*******************************97 PP
2	Wus_type_Homeobox	69.3	6.7e-23	8	49	24	65
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + P + +iq+it++L++yG+ie+kNVfyWFQNrkaR+rqkq Manes.11G131800.1.p 8 MAGPGRTQIQQITSRLKQYGHIEEKNVFYWFQNRKARQRQKQ 49 6789************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.928	1	48	IPR001356	Homeobox domain
CDD	cd00086	0.00433	11	49	No hit	No description
Pfam	PF00046	5.4E-10	11	47	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.8E-8	11	54	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-6	14	55	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MKSETMDMAG PGRTQIQQIT SRLKQYGHIE EKNVFYWFQN RKARQRQKQK QENTAYINRY 60 LHKAYQPVFS PLCSNVICGS YYLPRRDLGF YLRYPKVLLP NGFKRRPRSE KIDKARAYAF 120 TDSKQETIDD KFFGNNEETL PLFLLHPTGV LQGRAETLRS LGSMICAAEN SIANSASSSS 180 EMTTGVEDVS SDKPFFDIYF FFHETNAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G131800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021682189.1	2e-88	WUSCHEL-related homeobox 2-like
TrEMBL	A0A2C9V2I9	1e-156	A0A2C9V2I9_MANES; Uncharacterized protein
STRING	cassava4.1_021403m	1e-136	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8256	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	8e-18	WUSCHEL related homeobox 2

Link Out ? help Back to Top
Phytozome	Manes.11G131800.1.p