PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.09G021300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | FAR1 | ||||||||
Protein Properties | Length: 740aa MW: 85952.7 Da PI: 4.8931 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.8 | 1.6e-22 | 125 | 209 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH++ Manes.09G021300.1.p 125 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFD 209 69****************************************99888.....8999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-20 | 125 | 209 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.9E-26 | 330 | 423 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.062 | 617 | 653 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.9E-4 | 628 | 655 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 740 aa Download sequence Send to blast |
MIEIEESSQN SEQMLEEEDD DLEFDSNNLE IEGNELEIEG NGLEIEGSGL EIEGNDLEIE 60 SHDLETKGNV IENNCDQMLD IEEHVHDINT DNTLTVDGQN SESHGNSYPP PVVGMEFESY 120 DDAYNYYNCY AKELGFAIRV KSSWTKRNSK EKRGAVLCCN CEGFKTMKEA NSRRKETRTG 180 CLAMIRLRLV ESNRWRVDEV KLEHNHSFDP ERAQNSKSHK KMDAGSKRKV EPTLDVEVRT 240 IKLYRTAAVD PLGYGSSNSN EGHSNHPIDL LKRLKLKKGD AQIIYNYFCQ VQLTNPNFFY 300 LMDLTDEGFL KNVFWIDSRS RAAYAYFGDV IIFDTTCLSN NYEIPLFSFV GVNHHGQSIL 360 LGCGLLADGT FETYIWLFRA WLTCMLGRPP QTIITTNQCK VMQNAIAEVF PRAHHRLCLS 420 YIVQMVLENL GALPDYEAFQ MVFNTTIYDT LKVDEFEMAW EAMNQRFGIA NHDWLRSLYE 480 DRERWAPVYS KDTFFAGMST FQRGESITSF FDGWLHRQTS FREFFDMYEL VLQKKHQQEV 540 LDDFESRDSS SMLRTSSYYE LQLSKVYTNK IFKKFQDEVV MMSSCFSITQ VHANGSVFTY 600 MIKEREAEEN LSNFRNFELL YDKSGAEVRC NCCCFNFRGY LCRHALCILQ YNGVDEIPYQ 660 YILGRWRKDF KRLYVPDLGS NNVDIANPVQ WFDHLYKRAM QVVEEGMVSQ DHYMVAWQAF 720 KESLNKVRLV GDKHVQIDH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 269 | 277 | LLKRLKLKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.09G021300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622680.1 | 0.0 | protein FAR1-RELATED SEQUENCE 8-like | ||||
Refseq | XP_021622681.1 | 0.0 | protein FAR1-RELATED SEQUENCE 8-like | ||||
Refseq | XP_021622682.1 | 0.0 | protein FAR1-RELATED SEQUENCE 8-like | ||||
Refseq | XP_021622683.1 | 0.0 | protein FAR1-RELATED SEQUENCE 8-like | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A2C9V755 | 0.0 | A0A2C9V755_MANES; Uncharacterized protein | ||||
STRING | POPTR_0003s02550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Link Out ? help Back to Top | |
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Phytozome | Manes.09G021300.1.p |
Publications ? help Back to Top | |||
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