PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 740aa MW: 85952.7 Da PI: 4.8931

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.09G021300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.8	1.6e-22	125	209	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH++ Manes.09G021300.1.p 125 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFD 209 69**************************************99888.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-20	125	209	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-26	330	423	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.062	617	653	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.9E-4	628	655	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MIEIEESSQN SEQMLEEEDD DLEFDSNNLE IEGNELEIEG NGLEIEGSGL EIEGNDLEIE 60 SHDLETKGNV IENNCDQMLD IEEHVHDINT DNTLTVDGQN SESHGNSYPP PVVGMEFESY 120 DDAYNYYNCY AKELGFAIRV KSSWTKRNSK EKRGAVLCCN CEGFKTMKEA NSRRKETRTG 180 CLAMIRLRLV ESNRWRVDEV KLEHNHSFDP ERAQNSKSHK KMDAGSKRKV EPTLDVEVRT 240 IKLYRTAAVD PLGYGSSNSN EGHSNHPIDL LKRLKLKKGD AQIIYNYFCQ VQLTNPNFFY 300 LMDLTDEGFL KNVFWIDSRS RAAYAYFGDV IIFDTTCLSN NYEIPLFSFV GVNHHGQSIL 360 LGCGLLADGT FETYIWLFRA WLTCMLGRPP QTIITTNQCK VMQNAIAEVF PRAHHRLCLS 420 YIVQMVLENL GALPDYEAFQ MVFNTTIYDT LKVDEFEMAW EAMNQRFGIA NHDWLRSLYE 480 DRERWAPVYS KDTFFAGMST FQRGESITSF FDGWLHRQTS FREFFDMYEL VLQKKHQQEV 540 LDDFESRDSS SMLRTSSYYE LQLSKVYTNK IFKKFQDEVV MMSSCFSITQ VHANGSVFTY 600 MIKEREAEEN LSNFRNFELL YDKSGAEVRC NCCCFNFRGY LCRHALCILQ YNGVDEIPYQ 660 YILGRWRKDF KRLYVPDLGS NNVDIANPVQ WFDHLYKRAM QVVEEGMVSQ DHYMVAWQAF 720 KESLNKVRLV GDKHVQIDH*

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MIEIEESSQN SEQMLEEEDD DLEFDSNNLE IEGNELEIEG NGLEIEGSGL EIEGNDLEIE  60
SHDLETKGNV IENNCDQMLD IEEHVHDINT DNTLTVDGQN SESHGNSYPP PVVGMEFESY  120
DDAYNYYNCY AKELGFAIRV KSSWTKRNSK EKRGAVLCCN CEGFKTMKEA NSRRKETRTG  180
CLAMIRLRLV ESNRWRVDEV KLEHNHSFDP ERAQNSKSHK KMDAGSKRKV EPTLDVEVRT  240
IKLYRTAAVD PLGYGSSNSN EGHSNHPIDL LKRLKLKKGD AQIIYNYFCQ VQLTNPNFFY  300
LMDLTDEGFL KNVFWIDSRS RAAYAYFGDV IIFDTTCLSN NYEIPLFSFV GVNHHGQSIL  360
LGCGLLADGT FETYIWLFRA WLTCMLGRPP QTIITTNQCK VMQNAIAEVF PRAHHRLCLS  420
YIVQMVLENL GALPDYEAFQ MVFNTTIYDT LKVDEFEMAW EAMNQRFGIA NHDWLRSLYE  480
DRERWAPVYS KDTFFAGMST FQRGESITSF FDGWLHRQTS FREFFDMYEL VLQKKHQQEV  540
LDDFESRDSS SMLRTSSYYE LQLSKVYTNK IFKKFQDEVV MMSSCFSITQ VHANGSVFTY  600
MIKEREAEEN LSNFRNFELL YDKSGAEVRC NCCCFNFRGY LCRHALCILQ YNGVDEIPYQ  660
YILGRWRKDF KRLYVPDLGS NNVDIANPVQ WFDHLYKRAM QVVEEGMVSQ DHYMVAWQAF  720
KESLNKVRLV GDKHVQIDH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	277	LLKRLKLKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.09G021300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021622680.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Refseq	XP_021622681.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Refseq	XP_021622682.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Refseq	XP_021622683.1	0.0	protein FAR1-RELATED SEQUENCE 8-like
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2C9V755	0.0	A0A2C9V755_MANES; Uncharacterized protein
STRING	POPTR_0003s02550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Manes.09G021300.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]