PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G034700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 373aa    MW: 42096.6 Da    PI: 9.8932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G034700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12193237554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h + ErrRR++iN+ fe Lr+llP+ a      K +Ka++L ++ eY+ sL
  Manes.03G034700.1.p 193 HVISERRRREKINETFEALRKLLPPvA------KKDKASVLNRTREYLTSL 237
                          8899*********************66......99************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-16185258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.726188237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-10193237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.99E-10193242No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16193258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-12194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MENPYWPSSS SLSMRSLSMD SADSSPLLFN IPSTSSAVQQ VSQSLRPVPT TTSPLQLAMQ  60
SLQPAPSTTS PLQPAMQSTS NHQVAMREFA LTRNVHLPSQ ESEDAAMISA ILAVLTSPSS  120
STNSSITSNL PYNYCERQRA SAFKNYQAPS RQTRQNLRRQ SMLKRAITYY RSLNIVRRQH  180
MLASRPSNSQ LLHVISERRR REKINETFEA LRKLLPPVAK KDKASVLNRT REYLTSLNAE  240
IEKLSKKNKQ LEAQLQQLPA EEVAEEEGSE SSNERLELRV TQVSETTSEE QRIIDLQVVI  300
RGESPVQEML IRILEFLNQV NNVNVIFIVA STRTTESRSA NRVRLRLKIE GEEWEESAFQ  360
EAIRRVVADL AQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201ERRRRE
2197202RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G034700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606870.10.0LOW QUALITY PROTEIN: putative transcription factor bHLH041
TrEMBLA0A2C9W4880.0A0A2C9W488_MANES; Uncharacterized protein
STRINGcassava4.1_026020m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-44bHLH family protein