PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G012200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 35086.5 Da PI: 4.9436 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 108 | 157 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 s ykGVr+++ +g++ AeIrd + r r +lg++ taeeAa+a+ + ++++e Manes.01G012200.2.p 108 SNYKGVRRRP-WGKFSAEIRDpF-----RkVRLWLGTYTTAEEAAAAYRKKKQEFE 157 57********.**********76.....45******************99998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-15 | 108 | 155 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-9 | 108 | 157 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.66E-13 | 108 | 137 | No hit | No description |
SMART | SM00380 | 1.4E-15 | 109 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.097 | 109 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-20 | 109 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MPGLKRLILD QNLSFGKEEK KQPSHLLSTK KIRIICHDPE ATDSSSDEDE GQNERSNRLM 60 GSKLFVREIK ISLPPHESTA ENSSQENNTN RGKITSNSNQ KKTRILSSNY KGVRRRPWGK 120 FSAEIRDPFR KVRLWLGTYT TAEEAAAAYR KKKQEFEMMM EARKLKKLSI NTKLESEESS 180 GLFSYPSPSS VLDVPTRTSL SHGIEAPIKE ENNEEKTHEE ISELKMVEER QSVLDLWEEP 240 ALSPSISQEL LSGDYCSELG KFLNNVNNAE DFSMEVVDFF PMEGVMDLPD IELETLAFVE 300 ESLNFTCP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G012200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021618668.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
Refseq | XP_021618677.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
Refseq | XP_021618684.1 | 0.0 | ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | A0A251LZR6 | 0.0 | A0A251LZR6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014695m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-15 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G012200.2.p |