PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_74840.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 349aa    MW: 37307.3 Da    PI: 7.9602
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_74840.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM675.5e-21441735126
           NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknra..tksgyWkatgkdkevls 94 
                   f  hP+d+ l++ yL+++v++ ++++ ++ +++d+y++ P  L +     +++ +ek wyfF+    k+a+g+r+ r+  t +g W++    k+vl+
  MLOC_74840.1  44 FSAHPSDQVLIKSYLTPRVASGEHPC-HFTHDADVYTASPGALTRtyspaMASDGEKAWYFFTVLPAKSAHGQRRPRTvgTGEGCWHSEAGVKPVLD 139
                   5669*******************999.88**************84466755555888********************6347799************* PP

           NAM  95 kkgelvglkktLvfy...kgrapkgektdWvmhey 126
                    +++ +g ++ + f    +g++ ++ +t W+m e 
  MLOC_74840.1 140 -GDHPIGWRQFFSFMskeEGQRVRSIRTGWIMVEI 173
                   .999***********77668888899******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.31940195IPR003441NAC domain
PfamPF023653.9E-1242172IPR003441NAC domain
SuperFamilySSF1019413.66E-3143195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVESDSDSEQ DSTSLGGTSP SATPPRIPRI PTVPSDESAQ RPDFSAHPSD QVLIKSYLTP  60
RVASGEHPCH FTHDADVYTA SPGALTRTYS PAMASDGEKA WYFFTVLPAK SAHGQRRPRT  120
VGTGEGCWHS EAGVKPVLDG DHPIGWRQFF SFMSKEEGQR VRSIRTGWIM VEIGLDHGQQ  180
EGPSDEPVLC KVYRSPRAGP VVEPKAAAGR KRNSKRRLDT SGAGTPVLTL GHALGTRNST  240
ATATATATAT SSSGRKKRKT DSRNPGPVLR PARGVLKLTR PATPGRKKKD LCVRCGVEPA  300
ESHSGTAEEE DGSETDLVED DSMTGESAAI HGNEAGESSG GARTFYQFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-114219317166Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210217KRNSKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_74840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618790.0AK361879.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001A23.
GenBankAK3721310.0AK372131.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2146O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160039.11e-174uncharacterized protein LOC109745335
TrEMBLA0A287LAH40.0A0A287LAH4_HORVV; Uncharacterized protein
STRINGMLOC_74840.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-15NAC domain containing protein 2