PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53697.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WOX
Protein Properties Length: 178aa    MW: 19707.2 Da    PI: 9.6311
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53697.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.65.9e-152501457
                  HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  MLOC_53697.1  2 ILEEMYRGgLRTPTASQIQQITAHLahygRIEGKNVFYWFQNHKARDRQ 50
                  8******99*************************************996 PP
2Wus_type_Homeobox92.83e-301511464
  Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +iLee+y+ GlrtP++++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
       MLOC_53697.1  1 MILEEMYRGGLRTPTASQIQQITAHLAHYGRIEGKNVFYWFQNHKARDRQK 51
                       69************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.604151IPR001356Homeobox domain
SuperFamilySSF466899.2E-7254IPR009057Homeodomain-like
PfamPF000461.5E-12250IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-4250IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MILEEMYRGG LRTPTASQIQ QITAHLAHYG RIEGKNVFYW FQNHKARDRQ KLRRRLCMSH  60
HLLSCAHYYA AAKAGQYHHQ QQQLLGGAAV PPPVLQHQHQ QPQPQQQYYS SPCPGGGHDH  120
HLLPTTVPAA AAYAAAAAAG YGYPLAAVPA SRCADPSLSP PNTPLSFHHQ VHKHTYAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53697.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-78BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-78KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164197.12e-80putative WUSCHEL-related homeobox 2
TrEMBLA0A287ELV01e-126A0A287ELV0_HORVV; Uncharacterized protein
STRINGMLOC_53697.21e-120(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-31WOX family protein