PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_21524.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 444aa    MW: 47901.6 Da    PI: 6.5073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_21524.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12244288554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY++sL
  MLOC_21524.1 244 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILITAREYVNSL 288
                   8899********************95.....4999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15240307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-12241292No hitNo description
Gene3DG3DSA:4.10.280.103.9E-16243307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-10244288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-11245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDSSSWIHYG ANSGAAGGNS GLMCGYAASC VAPEGLYSRK EEEERHELLV GAQIQHHLNQ  60
ISMQMNMEDE PAAYILPAGD RAAVGMQQSV LDEFEFPHSH HAGGCSFPSS SSTSSSFRSA  120
SLSCSPEISS ANALPAAGLQ FPEVSSHVPP LVLPYDDDHH QHALNFHDTA AMAPGVMPPS  180
AFSRYARHLG ARRRPKPACG QKMFKRSMSV LVKMQTAMRY SHQQHHFQQA SAEAELSSVN  240
QLQHMISERK RREKLNDSFQ ALKTVLPPGS KKDKTSILIT AREYVNSLKS KICDLEEKNQ  300
ELQAQLARCA GGSLVEDDAE RIEVQIIRAA ATDDQEDGTA TSEVCTVKIA ARPAHGNTTD  360
VVLRTLQCLK DQMGEDDVSL VAMSTSDGDG GNGLTGAFLT MQLKSASGAK WEEEAVREAV  420
AKAIAVRTGA DRRGDAAGRP VSAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252ERKRRE
2248253RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_21524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679260.0AK367926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065A01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164742.10.0putative transcription factor bHLH041 isoform X1
TrEMBLF2DVK80.0F2DVK8_HORVV; Predicted protein
STRINGMLOC_21524.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.19e-28bHLH family protein