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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019506P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30225.4 Da PI: 5.8066 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1e-20 | 142 | 190 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIr p + +r++lg+f taeeAa+a+++a+++++g MELO3C019506P1 142 YRGVRQRP-WGKWAAEIRNP-----KlaTRVWLGTFNTAEEAARAYDKAALEFRG 190 9*******.**********9.....557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.88E-22 | 141 | 199 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-38 | 141 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 141 | 198 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.843 | 141 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 142 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.45E-35 | 142 | 198 | No hit | No description |
Pfam | PF00847 | 1.1E-14 | 142 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 164 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MNSLKRSRST ESPQSFHFSL PPPYFRPCIS TDQELSVIVT ALTSVVSGTA SDLHYSMADG 60 FWRQNQTPPP SFDSPASDSF SASATTSSLS SSSTDAIFSP SVFETCSVCQ IEGCLGCNFF 120 PPSSSQVNVE KKIGNKRSKK TYRGVRQRPW GKWAAEIRNP KLATRVWLGT FNTAEEAARA 180 YDKAALEFRG PRAKLNFPFT DDSLRMMSSE REIQRTENEI SRNGSNSSGN GIGNEDEIWG 240 KIAKDEMDQW MSTLMTDHGG DSSDSASIGT WEFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 140 | 199 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681851 | 0.0 | LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456122.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 1e-34 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S3C3R9 | 0.0 | A0A1S3C3R9_CUCME; ethylene-responsive transcription factor ERF109 | ||||
STRING | XP_008456122.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 6e-29 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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