PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016540P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 354aa    MW: 39371.8 Da    PI: 8.5804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016540P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.3e-53151431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLkkk+++++l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+r++ky++g r+nra++sgyWkatg+dk+vl++
  MELO3C016540P1  15 LPPGFRFHPTDEELVVHYLKKKANSSPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPVLAA 108
                     79****************************.88***************988899***************************************99 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  MELO3C016540P1 109 dgSNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 143
                     777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-647178IPR003441NAC domain
PROSITE profilePS5100561.43915178IPR003441NAC domain
PfamPF023654.9E-2816143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MESTDSSAGP QQPNLPPGFR FHPTDEELVV HYLKKKANSS PLPVAIIAEV DLYKFDPWEL  60
PAKATFGEQE WYFFSPRERK YPNGARPNRA ATSGYWKATG TDKPVLAADG SNQKVGVKKA  120
LVFYGGKPPK GIKTNWIMHE YRLADNKPCI NKPPGYDLAN KKNSLKLDDW VLCRIYKKNN  180
SHRPMDQERE DSMEEMIGSI PHSLRLNDQY PKLGINYTTL LENDQNLLQG IVANNSNDNN  240
NNGALSNATN SKRPASLFWT DEDQDHSGIS SNKRLHFENT TTDGASTSIT RTHSSNHNNL  300
QSSTSSFTTL LTNLPQTPPP PMHHHGGAHS VLASIGDGLF RPAYQIPGAN WYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-731218114168NO APICAL MERISTEM PROTEIN
1ut4_B7e-731218114168NO APICAL MERISTEM PROTEIN
1ut7_A7e-731218114168NO APICAL MERISTEM PROTEIN
1ut7_B7e-731218114168NO APICAL MERISTEM PROTEIN
3swm_A6e-731218117171NAC domain-containing protein 19
3swm_B6e-731218117171NAC domain-containing protein 19
3swm_C6e-731218117171NAC domain-containing protein 19
3swm_D6e-731218117171NAC domain-containing protein 19
3swp_A6e-731218117171NAC domain-containing protein 19
3swp_B6e-731218117171NAC domain-containing protein 19
3swp_C6e-731218117171NAC domain-containing protein 19
3swp_D6e-731218117171NAC domain-containing protein 19
4dul_A7e-731218114168NAC domain-containing protein 19
4dul_B7e-731218114168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452274.10.0PREDICTED: NAC transcription factor 56
SwissprotQ9LD441e-111NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A1S3BTI40.0A0A1S3BTI4_CUCME; NAC transcription factor 56
STRINGXP_008452274.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-107NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]