PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C013641P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 273aa MW: 31146.4 Da PI: 6.6766

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C013641P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.2	2.3e-34	4	111	25	128
NAM 25 gkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapk 115 gk+ + ++vi ++iy+++PwdLp +k++e+ewyfF++rd+k+ g r+nr+t gyWkatg+d+++ls ++ +gl+ktLvfykgrap+ MELO3C013641P2 4 GKRRHSFDVIGFLNIYQHDPWDLPDLAKNGEREWYFFVPRDRKHGgcGGGRPNRTTGIGYWKATGSDRRILSLsdPKRFIGLRKTLVFYKGRAPR 98 556666799*************8889999********9955599****************997555667************ PP NAM 116 gektdWvmheyrl 128 g+ktdWvm+eyrl MELO3C013641P2 99 GTKTDWVMNEYRL 111 *********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.705	1	130	IPR003441	NAC domain
SuperFamily	SSF101941	1.03E-40	7	130	IPR003441	NAC domain
Pfam	PF02365	3.2E-14	23	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MVFGKRRHSF DVIGFLNIYQ HDPWDLPDLA KNGEREWYFF VPRDRKHGGC GGGRPNRTTG 60 IGYWKATGSD RRILSLSDPK RFIGLRKTLV FYKGRAPRGT KTDWVMNEYR LPHNSSLPIM 120 DIVLCKIYRK ATSLKVLEQR AVEEETKNLH MNNNATILLT PPLMGEEEQG DDQDSFCTQN 180 IPRLNSSEVM AMKLEEISCG EDEEEVDSKV ADVGSSSLSL STTSIQIPKG FGMLTDLQVP 240 KMNMDWTQDQ FWNQFNSPWL LNFTTPSNIL NF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-37	9	135	45	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-37	9	135	45	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-37	9	135	45	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-37	9	135	45	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-37	9	133	48	171	NAC domain-containing protein 19
3swm_B	6e-37	9	133	48	171	NAC domain-containing protein 19
3swm_C	6e-37	9	133	48	171	NAC domain-containing protein 19
3swm_D	6e-37	9	133	48	171	NAC domain-containing protein 19
3swp_A	6e-37	9	133	48	171	NAC domain-containing protein 19
3swp_B	6e-37	9	133	48	171	NAC domain-containing protein 19
3swp_C	6e-37	9	133	48	171	NAC domain-containing protein 19
3swp_D	6e-37	9	133	48	171	NAC domain-containing protein 19
4dul_A	6e-37	9	135	45	170	NAC domain-containing protein 19
4dul_B	6e-37	9	135	45	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681918	0.0	LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448321.1	0.0	PREDICTED: LOW QUALITY PROTEIN: NAC transcription factor 29-like
Swissprot	Q10S65	1e-71	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1S3BJF6	0.0	A0A1S3BJF6_CUCME; LOW QUALITY PROTEIN: NAC transcription factor 29-like
STRING	XP_008448321.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-83	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]