PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C013641P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 272aa MW: 31234.7 Da PI: 6.2934 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.2 | 1.4e-27 | 29 | 110 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k++e+ewyfF++rd+k+ g r+nr+t gyWkatg+d+++ls ++ +gl+ktLvfykgrap+g+ktdWvm+eyrl MELO3C013641P1 29 AKNGEREWYFFVPRDRKHGgcGGGRPNRTTGIGYWKATGSDRRILSLsdPKRFIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 110 356889***********9955599********************997555667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.765 | 1 | 129 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-33 | 28 | 129 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-14 | 34 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MFLFFFFSSF FFLKRFNLFD IILIFEDLAK NGEREWYFFV PRDRKHGGCG GGRPNRTTGI 60 GYWKATGSDR RILSLSDPKR FIGLRKTLVF YKGRAPRGTK TDWVMNEYRL PHNSSLPIMD 120 IVLCKIYRKA TSLKVLEQRA VEEETKNLHM NNNATILLTP PLMGEEEQGD DQDSFCTQNI 180 PRLNSSEVMA MKLEEISCGE DEEEVDSKVA DVGSSSLSLS TTSIQIPKGF GMLTDLQVPK 240 MNMDWTQDQF WNQFNSPWLL NFTTPSNILN F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-30 | 32 | 134 | 69 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-30 | 32 | 134 | 69 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-30 | 32 | 134 | 69 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-30 | 32 | 134 | 69 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-30 | 32 | 134 | 72 | 173 | NAC domain-containing protein 19 |
3swm_B | 5e-30 | 32 | 134 | 72 | 173 | NAC domain-containing protein 19 |
3swm_C | 5e-30 | 32 | 134 | 72 | 173 | NAC domain-containing protein 19 |
3swm_D | 5e-30 | 32 | 134 | 72 | 173 | NAC domain-containing protein 19 |
3swp_A | 5e-30 | 32 | 134 | 72 | 173 | NAC domain-containing protein 19 |
3swp_B | 5e-30 | 32 | 134 | 72 | 173 | NAC domain-containing protein 19 |
3swp_C | 5e-30 | 32 | 134 | 72 | 173 | NAC domain-containing protein 19 |
3swp_D | 5e-30 | 32 | 134 | 72 | 173 | NAC domain-containing protein 19 |
4dul_A | 5e-30 | 32 | 134 | 69 | 170 | NAC domain-containing protein 19 |
4dul_B | 5e-30 | 32 | 134 | 69 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681918 | 0.0 | LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008448321.1 | 1e-176 | PREDICTED: LOW QUALITY PROTEIN: NAC transcription factor 29-like | ||||
TrEMBL | A0A1S3BJF6 | 1e-175 | A0A1S3BJF6_CUCME; LOW QUALITY PROTEIN: NAC transcription factor 29-like | ||||
STRING | XP_008448321.1 | 1e-175 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 2e-66 | NAC domain containing protein 36 |