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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012909P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | SBP | ||||||||
Protein Properties | Length: 1014aa MW: 111471 Da PI: 6.0943 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132 | 2.1e-41 | 155 | 232 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk ++ MELO3C012909P1 155 VCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINP 232 6**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-33 | 149 | 217 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.017 | 153 | 230 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.4E-38 | 154 | 235 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.5E-30 | 156 | 229 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 2.5E-8 | 311 | 338 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.91E-8 | 781 | 895 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.10E-6 | 785 | 913 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.5E-8 | 785 | 913 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1014 aa Download sequence Send to blast |
MEAGYGGEAC QLYGMGTMDL RAAVGKRNLE WDLNDWKWDG DLFIARPLNT VESGHLSRQL 60 FPIVSGIPLT NGGSSNSSSS CSDEANMGIE KGKREVEKRR RVTVIEDDNL NDEARNLSLK 120 VGGNGSQIVE RDAGSWEGTS GKKTKLAGGN SNRAVCQVED CGADLSNAKD YHRRHKVCET 180 HSKASNALVA NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNKRRRKI NPDNVVNGNS 240 PPDEQTSSYL LLTLLRILAN LHSNGSNQTT DQDLLSHLIR SLACQSSEHG RKNLSGILHE 300 PQNLLNNGSL SGKSDLVSTF LSNGPQVPLR SSKQHDTPIP ETPAQAIGRG GDTPAISSIK 360 PSTSNSPPAY SEIRDSTVGQ CKMMNFDLND AYVDSDDGME DIERQTLPVH MGTSSLECPS 420 WVQQDSHQSS PPQTSGNSDS ASAQSPSSSA GEAQSRTDRI ILKLFGKAPN DFPHVLRAQV 480 LDWLSHSPTE IESYIRPGCV ILTIYLRQTE AAWDNLCHDL STSFNRLLDV SDDAFWKTGW 540 VYVRVQHQIA FVYHGQVVVD TSLPLRNNNY CRITSVNPVA VSTSKKAIFS VKGINLSQPT 600 TRLLCAIEGK YLTQEASDES TESDDNLKAQ DDSLCVTFSC SIPVVYGRGF IEVEDDGFSS 660 SSFPFIVAEE DVCSEICSLQ SALELTETCS NSGETAELEG RSNAMEFIHE IGWLFHRNQL 720 KSRLGHLDPN ENLFSLPRFK WLMEFSMDHD WCAVVKKLLD ILQDGTVDAG GHPSLNLALM 780 EMGLLHRAVR KNSRSLVELL LRYPSKVNDA SSSEDSASVD GETDSFLFRP NVVGPAGLTP 840 LHIAAGKDDS EDVLDALTND PGMVGIEAWK SARDSTGSTP EDYARLRGHY SYIRLVQRKI 900 NKRSAAGHVV LDIPSSLSDG SWNQKQNTDF TSSRFEIGRT ELKPSQQHCK LCVRKPLGCG 960 TSSSASLVYR PAMLSMVAIA AVCVCVALLF KSSPEVLYVF RPFRWELLDY GTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-32 | 149 | 229 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 101 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681827 | 0.0 | LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447446.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A1S3BI32 | 0.0 | A0A1S3BI32_CUCME; squamosa promoter-binding-like protein 1 | ||||
STRING | XP_008447446.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Publications ? help Back to Top | |||
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