PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012215P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 420aa MW: 47198.6 Da PI: 4.8292 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105 | 9.8e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk....s 80 lp+G++F+P+d+e++++ L+k g + + + v+++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r +t+ + MELO3C012215P1 58 LPRGVKFDPSDQEIIWHLLAKVGIGGSrphpfI---DefiptVFEDDGICYTHPQKLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRkITDddfgD 148 799************888887744444476552...233333577778**********.677888899******************555466557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +W++tg++k+v+ +g ++g+kk++v+y + ++ekt+Wvmh+y+l MELO3C012215P1 149 VRWHKTGRTKPVVI-DGVQKGCKKIMVLYMSfaKGGRAEKTNWVMHQYHL 197 88************.99************6522666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-39 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.137 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-13 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MARPSWLVDS NRIATKIKSA SGTSNPRSVE WKSNPSKSCP NCQHTIDNSD VVQEWPGLPR 60 GVKFDPSDQE IIWHLLAKVG IGGSRPHPFI DEFIPTVFED DGICYTHPQK LPGVKQDGSV 120 SHFFHRAIKA YNTGTRKRRK ITDDDFGDVR WHKTGRTKPV VIDGVQKGCK KIMVLYMSFA 180 KGGRAEKTNW VMHQYHLGTE EDERDGEYVI SKIFHQQQNV KQGEVTEQEA PEIIDTIKVD 240 PHTPNSATPE PPRIESRCVD VDPEQDSIIT STSVLVEVPP EFEKSEKHNI IKPDGYSNEV 300 IDDNDNHIEE EPKWWEGESQ NILDSQQLVE ALSLCDDLLQ SQSPPRDINF NHGASGSKSC 360 FSEYAKLGPE DLKKDLEECQ NLVLDPANIE LDTPPEFRLS QLDFGSQESF LAWGGKAAE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT215862 | 0.0 | KT215862.1 Momordica charantia cultivar 24-K NAC domain-containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446555.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3BEU2 | 0.0 | A0A1S3BEU2_CUCME; NAC domain-containing protein 8 | ||||
STRING | XP_008446555.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-178 | NAC family protein |