PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C007586P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 304aa MW: 32693 Da PI: 9.8708 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.8e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + MELO3C007586P1 12 KGPWSPEEDDALQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.2e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEde +++a++ +G++ W+tIar + gRt++ +k++w++ MELO3C007586P1 66 PFSPEEDETIIRAHANFGNR-WATIARLLT-GRTDNAVKNHWNST 108 89******************.********9.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.302 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-32 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-17 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-19 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.02E-17 | 14 | 56 | No hit | No description |
SMART | SM00717 | 2.1E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.414 | 64 | 113 | IPR017930 | Myb domain |
CDD | cd00167 | 1.02E-11 | 66 | 109 | No hit | No description |
Pfam | PF00249 | 2.6E-14 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MALTRKDMDR IKGPWSPEED DALQRLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRPFSPE EDETIIRAHA NFGNRWATIA RLLTGRTDNA VKNHWNSTLK RKCSLMMNEG 120 YEVDPNVQPM KKSLSAGAAV NASNGLYMSP GSPSGSDISD SSVPVVAPTV YRPVARTGGV 180 IPPGESAPSS ASDPPTSLFL SLPGVDSSRH SGSGSTAQVP LMAAFAQIQS MTTTEQVRTA 240 QPSGGAAEKI NGFGVFSADL MAVMQEMIKS EVKSYMEGKG LSEQRGRRCF QEAKAGGIKN 300 VSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-40 | 11 | 113 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-40 | 11 | 113 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-40 | 11 | 113 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00632 | PBM | Transfer from PK28565.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440323.1 | 0.0 | PREDICTED: transcription factor MYB44 | ||||
Swissprot | O23160 | 5e-96 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A1S3B0F2 | 0.0 | A0A1S3B0F2_CUCME; transcription factor MYB44 | ||||
STRING | XP_008440323.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 4e-84 | myb domain protein r1 |
Publications ? help Back to Top | |||
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