![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C007559P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 23356.1 Da PI: 9.6541 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.5e-19 | 123 | 172 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp+ r r++lg+f taeeAa+a+++a+ +++g MELO3C007559P1 123 RFRGVRQRR-WGKWAAEIRDPR----RkVRVWLGTFQTAEEAARAYDRAAIEFRG 172 59****998.**********83....35***********************9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.2E-13 | 123 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-38 | 123 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.98E-32 | 123 | 183 | No hit | No description |
PROSITE profile | PS51032 | 24.342 | 123 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 123 | 182 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 123 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MSGFSGNFVT APFGSRLGVE EENSIMVSAL THVLTDSRIG LTHAQYQLLF SSNLDHNDDD 60 SNNNSGNVLW FPSAMDECKK CQFAGCLGCN YFEDGSNQNQ NVVKDEENDN KNKKKRRKKI 120 KGRFRGVRQR RWGKWAAEIR DPRRKVRVWL GTFQTAEEAA RAYDRAAIEF RGIGRAKLNF 180 PASDYQQNQI PQGYREPNLE EIKK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-19 | 124 | 181 | 6 | 63 | ATERF1 |
3gcc_A | 8e-19 | 124 | 181 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 111 | 118 | NKKKRRKK |
2 | 112 | 116 | KKKRR |
3 | 112 | 117 | KKKRRK |
4 | 112 | 118 | KKKRRKK |
5 | 113 | 117 | KKRRK |
6 | 113 | 118 | KKRRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440277.1 | 1e-152 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1S3B0B5 | 1e-151 | A0A1S3B0B5_CUCME; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_008440277.1 | 1e-152 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24431 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-22 | redox responsive transcription factor 1 |