PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007522P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 465aa    MW: 52372.1 Da    PI: 4.2665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007522P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-1715105199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv++p +  +++ +++p  f+++ +g    + + t++d +g+sW ++l  +k ++  ++++GWk Fv+ + Lk gDf+vF++dg+  f   vk
  MELO3C007522P1  15 FFKVFLPDSC-TLH-MSIPPAFMKHLNGT--FPEKATMQDHTGNSWGITL--EKLDDLLYFKNGWKAFVDYHSLKYGDFLVFQYDGHCMF--DVK 101
                     7888865444.455.8*******666666..6778***************..9**999***************************98888..898 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f k
  MELO3C007522P1 102 IFGK 105
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-2413108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.04213106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-2114108IPR015300DNA-binding pseudobarrel domain
CDDcd100177.02E-2015103No hitNo description
PfamPF023622.3E-1415104IPR003340B3 DNA binding domain
SMARTSM010193.6E-1515106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MMSHSRIEAA STLEFFKVFL PDSCTLHMSI PPAFMKHLNG TFPEKATMQD HTGNSWGITL  60
EKLDDLLYFK NGWKAFVDYH SLKYGDFLVF QYDGHCMFDV KIFGKNGCKK AAAAKAASSI  120
PVLETEIVEA GNSVSDSEAK VADAGNSIAN LEAMSADAGN SDSKLEVVEA DTVNAVPTLR  180
VKEEPVVEEE DVNPSISHKR KRLQDGSELD HKSKSIVPLN RGGPYNVSNS VEQAIPRGPF  240
FERTMKRWSS QMLVEEPLHY MPFFGVENFR IEPFKIIPVR TNPEVAKYFE ECNQFRERSW  300
EMLCSHAHSL SANQELKYIQ FEHEEVDRQQ NEQYFQDDLQ EDNQSEGPDI IMTDELPISQ  360
SEEILYLEYQ PLRTDTEDNR KSAKMDTTEL VGNSYDIEEN NMDATTELGG NLCDNIKENN  420
VDTTELGGNS CDDIEENNVD STELGGNLCD NIKENNVDTT EVTM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440207.10.0PREDICTED: uncharacterized protein LOC103484737 isoform X1
RefseqXP_008440208.10.0PREDICTED: uncharacterized protein LOC103484737 isoform X2
TrEMBLA0A1S3B1760.0A0A1S3B176_CUCME; uncharacterized protein LOC103484737 isoform X1
TrEMBLA0A1S3B1B60.0A0A1S3B1B6_CUCME; uncharacterized protein LOC103484737 isoform X2
STRINGXP_008440207.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2444533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-21B3 family protein