PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007521P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 306aa    MW: 34450.3 Da    PI: 9.8607
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007521P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.73e-2021111199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+    +++s+r+++p  f++ ++g    + + +++d+sg+sW v+l  +  ++ +++++GW+eFv++++Lk g f+vF++dg++ f   vk
  MELO3C007521P1  21 FFKVF--LPNSSSQRMSIPPAFVKYFNGR--IPSEAIIRDQSGKSWHVTL--EELKNIVFFKDGWQEFVDSHHLKRGYFLVFQYDGSHVF--DVK 107
                     89999..67778889********655655..56689**************..99999****************************98888..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f k
  MELO3C007521P1 108 IFGK 111
                     9876 PP
2B334.73.1e-112042881498
                     T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE- CS
              B3  14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfr 98 
                     + + +p + + ++     k+    l++ d  grsW vk     ++gr+ lt+GW  F  an L   D ++F+  ld++  ++el+vk+ r
  MELO3C007521P1 204 KAIHIPQSVIVSNdfL-LKP---NLIIIDDMGRSWVVKA-TPISRGRFSLTTGWGAFFIANSLTIDDECTFEfvLDSNnLCGELKVKITR 288
                     5577888888888642.322...4889999*********.3566677*************************776777789999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-2518114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.4119112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-2520114IPR015300DNA-binding pseudobarrel domain
PfamPF023627.3E-1821110IPR003340B3 DNA binding domain
CDDcd100171.12E-2021109No hitNo description
SMARTSM010192.1E-2021112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-11187288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-13188285IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.193191290IPR003340B3 DNA binding domain
CDDcd100171.98E-8192288No hitNo description
SMARTSM010190.0033194290IPR003340B3 DNA binding domain
PfamPF023628.8E-9202288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAKSVMAVVD PGSRISSTLE FFKVFLPNSS SQRMSIPPAF VKYFNGRIPS EAIIRDQSGK  60
SWHVTLEELK NIVFFKDGWQ EFVDSHHLKR GYFLVFQYDG SHVFDVKIFG KNGCKKELVA  120
RIGNPVPTVK VKDEPLSEQD YSTSLTRSKR SDSEVRSTDS SATAPKSRRR SPSNLEEHSP  180
SKTAEHISKK SPTFKHIVKH WSHKAIHIPQ SVIVSNDFLL KPNLIIIDDM GRSWVVKATP  240
ISRGRFSLTT GWGAFFIANS LTIDDECTFE FVLDSNNLCG ELKVKITRSL EITQQEKQTT  300
IVQEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-13161146104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440203.10.0PREDICTED: putative B3 domain-containing protein At5g66980 isoform X1
TrEMBLA0A1S3B0600.0A0A1S3B060_CUCME; putative B3 domain-containing protein At5g66980 isoform X1
STRINGXP_008440203.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-35B3 family protein