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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C006973P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 37236 Da PI: 4.6151 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 104 | 154 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g MELO3C006973P1 104 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 154 59********.**********82....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.70E-33 | 104 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-30 | 105 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-36 | 105 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 105 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 105 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 105 | 162 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-10 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEDTLFSPVK FTEHRNFTNK FSAKKHHQSE SRVVRISVTD PDATDSSSDE DDFFERQRVK 60 KYINEIKIQS GCRNNLLPSC RKRPAGDRSE FRRQGKVVPP TNGKKFRGVR QRPWGKWAAE 120 IRDPARRVRL WLGTYDTAEE AAMVYDNAAI QLRGPDALTN FATPPAVPMP EKEVETTNIP 180 SVSGSYYDSS EESHNLSSPT SVLHFRTPSP EESEKPPKSD DLQKPPAPFV DDQFHECQGE 240 TSFSEEYHTE FPRFDYDFKF PSPESPIFLD DQPLFFEDSI WNDDFSEIFT NLPEDFGSPL 300 LSSSSIGQGG DDYFQDILTG SDPLVVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 103 | 161 | 3 | 62 | ATERF1 |
3gcc_A | 2e-21 | 103 | 161 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008439327.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A1S3AY55 | 0.0 | A0A1S3AY55_CUCME; ethylene-responsive transcription factor CRF4-like | ||||
STRING | XP_008439327.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-50 | cytokinin response factor 4 |