PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006973P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 328aa    MW: 37236 Da    PI: 4.6151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006973P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19104154155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  MELO3C006973P1 104 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 154
                     59********.**********82....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.70E-33104162No hitNo description
Gene3DG3DSA:3.30.730.105.9E-30105162IPR001471AP2/ERF domain
SMARTSM003802.0E-36105168IPR001471AP2/ERF domain
PfamPF008471.0E-12105154IPR001471AP2/ERF domain
PROSITE profilePS5103223.762105162IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21105162IPR016177DNA-binding domain
PRINTSPR003673.4E-10106117IPR001471AP2/ERF domain
PRINTSPR003673.4E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEDTLFSPVK FTEHRNFTNK FSAKKHHQSE SRVVRISVTD PDATDSSSDE DDFFERQRVK  60
KYINEIKIQS GCRNNLLPSC RKRPAGDRSE FRRQGKVVPP TNGKKFRGVR QRPWGKWAAE  120
IRDPARRVRL WLGTYDTAEE AAMVYDNAAI QLRGPDALTN FATPPAVPMP EKEVETTNIP  180
SVSGSYYDSS EESHNLSSPT SVLHFRTPSP EESEKPPKSD DLQKPPAPFV DDQFHECQGE  240
TSFSEEYHTE FPRFDYDFKF PSPESPIFLD DQPLFFEDSI WNDDFSEIFT NLPEDFGSPL  300
LSSSSIGQGG DDYFQDILTG SDPLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21103161362ATERF1
3gcc_A2e-21103161362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439327.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A1S3AY550.0A0A1S3AY55_CUCME; ethylene-responsive transcription factor CRF4-like
STRINGXP_008439327.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-50cytokinin response factor 4