PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

MELO3C006641P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 251aa MW: 28165.8 Da PI: 9.8565

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006641P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.6	7.9e-10	23	58	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a+ + +R+ +++ MELO3C006641P1 23 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 58 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.157	19	72	IPR017884	SANT domain
SuperFamily	SSF46689	1.2E-10	19	66	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-4	20	68	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.9E-7	23	58	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-9	23	58	IPR001005	SANT/Myb domain
CDD	cd00167	1.61E-7	24	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MESMLPFSDS LQKRKFADLL GPQWSKDEVE QFYEAYRKYG KDWKKVAAAV RNRSTEMVEA 60 LFTMNRAYLS LPEGTASVVG LIAMMTDHYS VLRDSESEQE SNEDSGAIRK PQKRLRGKSR 120 NSNLKGSDAH FGDASQSQLL PTNYGCLSLL KKRRSGIKPH AVGKRTPRVP VSYSYDKDGR 180 EKLFSPSKHN SKGKVDDPND DDVAHEIALV LTEASQRDGS PQLSQTPNPK IEGHVLSPIR 240 NDRMVIIHRF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-159	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-159	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134200.2	1e-158	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_011651046.1	1e-158	PREDICTED: protein ALWAYS EARLY 3 isoform X3
Swissprot	Q6A332	9e-70	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0A0L571	1e-156	A0A0A0L571_CUCSA; Uncharacterized protein
STRING	XP_008438872.1	1e-171	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-66	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]