PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C006059P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 277aa MW: 31545.1 Da PI: 5.2814

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C006059P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.4	1e-19	89	138	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r +r++lg+++taeeAa +++a+ +l+g MELO3C006059P1 89 KFRGVRRRP-WGKWAAEIRDPL----RrTRVWLGTYDTAEEAAVVYDEAAVRLRG 138 89*****.******73....45***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.9E-30	88	146	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.459	89	146	IPR001471	AP2/ERF domain
CDD	cd00018	2.63E-31	89	145	No hit	No description
SMART	SM00380	2.2E-37	89	152	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-21	89	146	IPR016177	DNA-binding domain
Pfam	PF00847	1.8E-12	89	138	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	90	101	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-10	112	128	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGRVFSGGIK FRETRTVTHK PAAETKLVRI SYTDADATDS SSGEDEEPIL VRHVKRHVTE 60 IRLLTTDCSK KAPPKSRANP PRNSESHRKF RGVRRRPWGK WAAEIRDPLR RTRVWLGTYD 120 TAEEAAVVYD EAAVRLRGPS ALTNFVAETP HSETTLVTYL TPPPPENQST AAVVSETKES 180 RSVCSPTSVL RLEEENWRAI DHYLSEESGL EDEFNWLYDR NSNSFLFNLI SPQPIFSDQM 240 EMTIPKWEDF GDISVDFDSC KWDVENYFQD PNFSIA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-20	87	151	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016899074.1	0.0	PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBL	A0A1S4DSW2	0.0	A0A1S4DSW2_CUCME; pathogenesis-related genes transcriptional activator PTI6-like
STRING	XP_008437958.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF450	34	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	1e-25	cytokinin response factor 4