PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004627P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 320aa    MW: 35590.1 Da    PI: 10.2686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004627P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11119163554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++ErrRR+++N++f  Lr++lP++     +K +Ka++L  + eY+ +L
  MELO3C004627P1 119 HMIAERRRREKLNESFLALRSILPPQ-----TKKDKASVLATTREYLTKL 163
                     7799*********************9.....8**************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.697114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-11114168No hitNo description
SuperFamilySSF474591.57E-16115189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-14119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-9119163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-12120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MASSSKLPPN IPSSLSPKSP SIEETPEIPS LLFYNDLSTI PLLPLPPGSS LSGGSRGSAF  60
EEYNVKKPAV EVAMADENRK RESLMKKGLV FYRKFKKRRI EERIIIEAAK RPASAQLIHM  120
IAERRRREKL NESFLALRSI LPPQTKKDKA SVLATTREYL TKLKAQVSEL SHRNHILLQA  180
QDLHIATHHQ STTPTSSLNE PFTVKVSYAP PSPGSTDEIV IDLEIIVRGD MGPLMTDIAI  240
RVLQFLKTIV NVRVVLSFHA NHTTSPSPLT RLGFRFSLQG GEWDESAFLE AVRRIVSDLL  300
HVGTHISYSW ATLLHHAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17898RKRESLMKKGLVFYRKFKKRR
2122127ERRRRE
3123128RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459381.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
RefseqXP_008459388.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A1S3C9K10.0A0A1S3C9K1_CUCME; putative transcription factor bHLH041 isoform X2
TrEMBLA0A1S3CAK00.0A0A1S3CAK0_CUCME; putative transcription factor bHLH041 isoform X1
STRINGXP_008459381.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-38bHLH family protein