PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002331P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 530aa    MW: 59890.6 Da    PI: 5.2547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002331P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-144791697
                    EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                     ++p  fa++   ++   +k ++led+ g++W+v++  + + g+  +++GW+ F +++gL++gDf++F ++   + +++v+++
  MELO3C002331P1  4 KYFPPIFAATVsRLV---NKNVVLEDSLGEQWNVTI--SDCEGSLAFQEGWNAFSSEHGLETGDFLIFNHIM--DLHFNVSIY 79
                    577888888885444...457***************..*******************************775..454577776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.507182IPR003340B3 DNA binding domain
PfamPF023625.1E-12379IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-14384IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-12379No hitNo description
Gene3DG3DSA:2.40.330.104.0E-15584IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-14425526IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-7439526No hitNo description
SuperFamilySSF1019364.71E-11442525IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-7458524IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08466528IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MSRKYFPPIF AATVSRLVNK NVVLEDSLGE QWNVTISDCE GSLAFQEGWN AFSSEHGLET  60
GDFLIFNHIM DLHFNVSIYT KTGCEKIEFP KKGNMRKRAS TGPLFETINE GLTNPQVSYP  120
SVGSESNMAL SQDKCLMAGS QNMNVNWNKR PKYRRNDEGR GPLCKTDVID DSYCFINQNK  180
DVGLEENRSP LLDLFLMEMQ MVNPSTKENT TKNVGEDELD PNCTSTSATA ANDAIIVTLA  240
NDAPIDIKGE REALPLDTCA NKMIDKIQCF EKANIKMSVS DNNPCHDKTI EVPFISAAKN  300
SDRDVERFYE TPLKMVKACQ NVPAICNTPS TITRHDLGSN EKRSSSTEHC RSVKQEYAPN  360
SSEVRKWDVA NIIKKEPLEI KTEVNNFGDS IKQILEPKVI KEEYTEMSNQ SGRDNNDDTN  420
YEDPIETPAH ISCIVAKDTL SFLELPTSLH LSCSRGRRNP EKKRIVLLRD PRKRLWPILY  480
HEMPNVKVLT SGWEAFRSGN EIQSGDECLF RIEDEVERIF EVSIRKCKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1462473KRIVLLRDPRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439306.10.0PREDICTED: uncharacterized protein LOC103484129
RefseqXP_008439313.10.0PREDICTED: uncharacterized protein LOC103484129
TrEMBLE5GBX00.0E5GBX0_CUCME; Uncharacterized protein
STRINGXP_008439306.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-10B3 family protein