PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000696331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 21859.7 Da PI: 6.3979 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 24.9 | 2.6e-08 | 45 | 74 | 20 | 49 |
HHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyey 49 i+ K ELSvL+++ev i++ss g+++ + MDP0000696331 45 IFNKTAELSVLTGVEVVAIVVSSYGQVFCF 74 899**********************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 5.5E-6 | 45 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-8 | 45 | 94 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.363 | 45 | 78 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDRDRETNTR CTWFTQIGYV HGVDEFSLIV KGLHKYIGTS SPLVIFNKTA ELSVLTGVEV 60 VAIVVSSYGQ VFCFGSPAPD AIINRNLANN NASLFPADQP DHPTNASKVT IMHRSNKQVE 120 EYMNARTRME AEKIKRGNNN NNIIDHGERG GVWWEKPIET MTNLEELEEY MEALHKLKHN 180 VEVRTNEMIR NI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2657 | 5e-50 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF968765 | 3e-54 | HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele. | |||
GenBank | HF968766 | 3e-54 | HF968766.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, non-columnar allele. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963356.1 | 1e-44 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A251PUI4 | 3e-45 | A0A251PUI4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008351558.1 | 2e-78 | (Malus domestica) | ||||
STRING | XP_008360640.1 | 3e-79 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16581 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-07 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000696331 |