PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000545420
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 279aa    MW: 29836.3 Da    PI: 7.2749
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000545420genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.72.6e-23134196163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    ++e krerrkq+NRe+ArrsR+RK+ae+eeL++ v++L+aeN aLk+e+++l++++a+lk e+
  MDP0000545420 134 DREMKRERRKQSNRESARRSRLRKQAETEELAQQVDVLSAENVALKSEINRLTENSATLKLEN 196
                    5899********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-18128193No hitNo description
SMARTSM003381.8E-21134198IPR004827Basic-leucine zipper domain
PfamPF001702.1E-21135196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.898136199IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-12137193No hitNo description
CDDcd147022.10E-20139187No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MQAATPLNME TPTKSSGNTE RGLMKKLKEF DGLAMSIGSG NVTNAEGGAA GDRKTDMQPG  60
PVSAKEANAG TDKVLGVTIA AASIPGKVVG PAVSPGVTTV LELNNPPILN SKTTPTCVPX  120
SCAVLPPETW IDNDREMKRE RRKQSNRESA RRSRLRKQAE TEELAQQVDV LSAENVALKS  180
EINRLTENSA TLKLENTTLL DKLKNARAGR MEDIIMNIDD KRVQPFSTEN LLSRVNNAGS  240
IARDAEKDGD NDMYEKNNGA KLHQLLDASP RADAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRSRLRK
2150157RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028961558.10.0common plant regulatory factor 1 isoform X1
SwissprotQ990892e-76CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A498JFV90.0A0A498JFV9_MALDO; Uncharacterized protein
STRINGXP_008347159.10.0(Malus domestica)
STRINGXP_008376053.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2773323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-62G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]