PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000418901
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 278aa    MW: 30764.7 Da    PI: 6.044
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000418901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.57e-16180265291
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    +Y+eY+++  F v k++s+k  ++ge    t++C ++g++++++++     ++ ++ + +Cka+l+  +   +kw+v++++l+HnH l+p
  MDP0000418901 180 YYKEYGRQSRFPVIKRSSTKG-DDGELRYITMCCARSGTSKSTSSN---PLKPYPSIKNDCKAQLRAGLYLGEKWRVNSVKLDHNHGLSP 265
                    8*************9999887.9999***************99888...999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-12180265IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSKFFFSHQQ QEHQKIEVTQ IHSQDNMADL FTKSLSKTTF HLHNLDVGGW LSRSSRSSLA  60
RSGSVSSRAS TILTSAAGCL VLPGTRSFSN EFTEEDDVAE VSSCNETESD GVHTIETSNE  120
SIEKDDVIEA TSDATEAESN GVHAIENNGT NMENTMNVEE KVQEPQVGMI FDNADQVATY  180
YKEYGRQSRF PVIKRSSTKG DDGELRYITM CCARSGTSKS TSSNPLKPYP SIKNDCKAQL  240
RAGLYLGEKW RVNSVKLDHN HGLSPTKTRY WKCFXGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8860211e-57DQ886021.1 Malus x domestica caffeic acid O-methyltransferase (omt4) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364895.21e-124PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A314UBA86e-51A0A314UBA8_PRUYE; Acylamino-acid-releasing enzyme
STRINGXP_009364884.11e-133(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13793717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.12e-11FAR1-related sequence 8