PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000401086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 503aa MW: 55925.9 Da PI: 6.3666 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.8e-13 | 356 | 402 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq MDP0000401086 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 402 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.9E-44 | 49 | 235 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.831 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.31E-14 | 355 | 406 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-18 | 355 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 356 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-18 | 356 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-15 | 358 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.711 | 437 | 502 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MGEKFWVNDE DKVVXESVLG TEACQFLISL ASENALSELI RPPGQLGVQQ GLCQLVNGSN 60 WNYAIFWQAV SSKSGGPALI WGDGHCRDTK GGGAGDVNSN RDSSSEAMQK KKEVKKWVLE 120 KLHACFGGLN GDNYARRLDG VSDMEMFHLS SMFYAFQLDS ISHCGPGESY KSGKLIWVSD 180 AGSCLHHYQS RSFLARLAGF QTVVFVPMKS GVVELGSVKS TPEEQSYVDT VRSAFGESXP 240 IQAKAFPMIF GRELSLGGPK SQSVNISFTP KIEEDFAFPP ESFELQSVGT SNGCRSEDXE 300 VKLFPQMNQM MVDGFNVQTR VSSSELLKDE SSAQIDERKP RKRGRKPANG REEPLNHVEA 360 ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYITD LQXKIRXMET EKQMVNNKGK 420 QLPVPEIDFQ ERLEDAVVRM NCPLDSHPVS EVFRTLREHK IVAQESNVSI TDNDKVIHTF 480 SIQTQSGDAE QLKEKLVASL SK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-30 | 350 | 434 | 2 | 83 | Transcription factor MYC2 |
5gnj_B | 3e-30 | 350 | 434 | 2 | 83 | Transcription factor MYC2 |
5gnj_E | 3e-30 | 350 | 434 | 2 | 83 | Transcription factor MYC2 |
5gnj_F | 3e-30 | 350 | 434 | 2 | 83 | Transcription factor MYC2 |
5gnj_G | 3e-30 | 350 | 434 | 2 | 83 | Transcription factor MYC2 |
5gnj_I | 3e-30 | 350 | 434 | 2 | 83 | Transcription factor MYC2 |
5gnj_M | 3e-30 | 350 | 434 | 2 | 83 | Transcription factor MYC2 |
5gnj_N | 3e-30 | 350 | 434 | 2 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 337 | 345 | RKPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12869 | 0.0 | bud| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008372342.2 | 0.0 | transcription factor bHLH3-like | ||||
Swissprot | A0A3Q7H216 | 0.0 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A498JXX3 | 0.0 | A0A498JXX3_MALDO; Uncharacterized protein | ||||
STRING | XP_008372342.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8263 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-165 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000401086 |
Publications ? help Back to Top | |||
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